View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3348_low_10 (Length: 367)
Name: NF3348_low_10
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3348_low_10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 30575905 - 30576258
Alignment:
| Q |
14 |
caaatactacaatagaattagtaaggccggaacagtgagcaatcgagtgaaaaatatacctgaaattcatataaatgttgagcaaaaacaactaccaatt |
113 |
Q |
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| T |
30575905 |
caaatactacaatagaattagtaaggccggaacagtgagcaatcgagtgaaaaatatacctgaaattcataaaaatgttgagcaaaaacaactaccaatt |
30576004 |
T |
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| Q |
114 |
ccaagagcagaaagttcaaccacattgtacatttttgatagagtcatatgaaaggaaaaactttcccaaccacgacatacagatctggtccgaatctgtg |
213 |
Q |
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| T |
30576005 |
ccaagagcagaaagttcaaccgcattgtacatttttgatagagccatatgaaaggaaaaactttcccaactgcgacatacagatctggtccgaatctgtg |
30576104 |
T |
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| Q |
214 |
cttgccgagaatgaatgactttgttgtcgtagtggttggtttcttccataatatcgacgggagataatacagaggaaggagaacaattatattgaagaaa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30576105 |
cttgccgagaatgaatgactttgttgtcgtagtggttggtttcttccataatatcgacgggagataatacagaggaaggagaacaattatattgaagaaa |
30576204 |
T |
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| Q |
314 |
gaaccattgattaatggatcagcattacattaaatttatatacaagagggatga |
367 |
Q |
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| T |
30576205 |
gaaccattgattaatggatcagcattacattaaatttatatacaagatggatga |
30576258 |
T |
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