View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3348_low_11 (Length: 363)
Name: NF3348_low_11
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3348_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 37100944 - 37100765
Alignment:
| Q |
18 |
agaagggcagtgagattcattttcatttcattgggaaggaaaactctgagttaagttgcagagacacacgttaactctttatctaccctctctctgtctc |
117 |
Q |
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| T |
37100944 |
agaagggcagtgagattcattttcatttcattgggaaggaaaactctgagttaagttgcagagacacacgttaactctttatctaccctctctctgtctc |
37100845 |
T |
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| Q |
118 |
cacctgcaattaacacaacacaacacttcactactagtagtactattgtaactgttatgcttgcttgtgttgttgatgtt |
197 |
Q |
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| T |
37100844 |
cacctgcaattaacacaacacaacacttcactactagtagtactactgtaactgttatgcttgcttgtgttgttgatgtt |
37100765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 219 - 352
Target Start/End: Complemental strand, 37100741 - 37100604
Alignment:
| Q |
219 |
aactatttgatttgtttgatgtacacaacagaaagatgaaagaaagactacactactactcattttgcataagatgaatctgattccaccttttac---- |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37100741 |
aactatttgatttgtttgatgtacacaacagaaagatgaaagaaagactacactactactcattttgcataagatgaatctgattccaccttttacagat |
37100642 |
T |
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| Q |
315 |
agattattatactttccaagaaccccaaaaatccctat |
352 |
Q |
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| T |
37100641 |
agattattatactttccaagaaccccaaaaatccctat |
37100604 |
T |
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