View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3348_low_21 (Length: 236)
Name: NF3348_low_21
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3348_low_21 |
 | |
|
| [»] scaffold0229 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0229 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 16744 - 16928
Alignment:
| Q |
1 |
cactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattg---------ataatatttggttaattttg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
16744 |
cactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgataatattgataatatttggttaattttg |
16843 |
T |
|
| Q |
92 |
tattggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16844 |
tattggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc |
16928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 1401614 - 1401430
Alignment:
| Q |
1 |
cactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgataatatt---------tggttaattttg |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1401614 |
cactcttcgagtacaatttatatatgaactgacttggatggaggactctgaggttttttgtttctacattgataatattgataatatttggttaattttg |
1401515 |
T |
|
| Q |
92 |
tattggctttataggtatgcatttgtttgaaaagcttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1401514 |
tattggctttataggtatgcatttgtttgaaaagtttctatgcaatgtgatatgaatttagttgcagattattaactcatccatc |
1401430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 1376218 - 1376128
Alignment:
| Q |
73 |
taatatttggttaattttgtattggctttataggtatgcatttgtttgaaaag--cttctatgcaatgtgata-tgaatttagttgcagat |
160 |
Q |
| |
|
|||||||||||||| |||| |||| |||| |||| ||||| || ||||||||| ||||||||||||||||| || ||||||||||||| |
|
|
| T |
1376218 |
taatatttggttaaatttgaattgactttgtaggaatgcacttctttgaaaagttattctatgcaatgtgatagggattttagttgcagat |
1376128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University