View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3348_low_3 (Length: 539)

Name: NF3348_low_3
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3348_low_3
NF3348_low_3
[»] chr3 (6 HSPs)
chr3 (265-527)||(20969074-20969337)
chr3 (141-249)||(20968586-20968694)
chr3 (18-99)||(20968453-20968534)
chr3 (180-301)||(19684863-19684982)
chr3 (181-301)||(19694474-19694592)
chr3 (118-158)||(20968535-20968575)
[»] chr6 (4 HSPs)
chr6 (180-303)||(8987986-8988107)
chr6 (93-310)||(28927133-28927348)
chr6 (180-301)||(9012435-9012554)
chr6 (181-301)||(9003270-9003388)
[»] scaffold0036 (1 HSPs)
scaffold0036 (180-301)||(104251-104371)
[»] chr5 (4 HSPs)
chr5 (172-302)||(729009-729137)
chr5 (170-300)||(19667571-19667699)
chr5 (172-301)||(720029-720156)
chr5 (172-301)||(6332746-6332873)
[»] chr4 (4 HSPs)
chr4 (172-302)||(111495-111623)
chr4 (172-302)||(3474389-3474517)
chr4 (172-301)||(120592-120719)
chr4 (93-301)||(14915894-14916100)
[»] scaffold0573 (1 HSPs)
scaffold0573 (93-301)||(3344-3550)
[»] scaffold0096 (1 HSPs)
scaffold0096 (172-301)||(48363-48490)
[»] chr7 (4 HSPs)
chr7 (172-301)||(606080-606207)
chr7 (172-301)||(615175-615302)
chr7 (172-296)||(13946480-13946602)
chr7 (174-298)||(13908813-13908935)
[»] scaffold0028 (1 HSPs)
scaffold0028 (180-301)||(81167-81287)
[»] chr2 (2 HSPs)
chr2 (172-248)||(31715855-31715931)
chr2 (93-301)||(24988505-24988712)
[»] chr1 (1 HSPs)
chr1 (121-301)||(21758621-21758799)
[»] scaffold0500 (1 HSPs)
scaffold0500 (93-301)||(3307-3514)


Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 265 - 527
Target Start/End: Original strand, 20969074 - 20969337
Alignment:
Q  265 aaacttaaaataggggtttattaatattatctcaacaaatacatcagggatagtttgggaaatttatatatttaaactgtagcaattacagtttaagcgt 364  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20969074 aaacttaaaatagggatttattaatattatctcaacaaatacatcagggatagttcgggaaatttatatatttaaactgtagcaattacagtttaagcgt 20969173  T
Q  365 gcaacaaacattttctcttcc-tccatttactggtgcatgttgttttagaaaaactattagaaacatctcataatcttctaccaacacttcatcaatctc 463  Q
    ||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20969174 gcaacaaacattttctcttccctccatttactggtgcacgctgttttagaaaaactattagaaacatctcataatcttctaccaacacttcatcaatctc 20969273  T
Q  464 ccattcagctcttacacattctctctccttacaaaccgattgacattcctcataacttcttctc 527  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20969274 ccattcagcttttacacattctctctccttacaaaccgattgacattcctcataacttcttctc 20969337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 141 - 249
Target Start/End: Original strand, 20968586 - 20968694
Alignment:
Q  141 aagttattgtatccttttgagaatatgtttttgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaat 240  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||    
T  20968586 aagttattgtatccttttaagaatatgtttttgcaactaaaaaatactcacacaaagatgttaaatacaataatatcagaattcatttataaaataaaat 20968685  T
Q  241 ttaaatata 249  Q
     ||||||||    
T  20968686 ctaaatata 20968694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 20968453 - 20968534
Alignment:
Q  18 gaacttgtgtgtgccaacgtgttacacttgtttgggcaagttttatccaaatttaacaattgcattttatcctttatttctt 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20968453 gaacttgtgtgtgccaacgtgttacacttgtttgggcaagttttatccaaatttaacaattgcattttatcctttatttctt 20968534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 301
Target Start/End: Complemental strand, 19684982 - 19684863
Alignment:
Q  180 aaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaaataggg 279  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||       |||||||||||| ||||||||||    
T  19684982 aaaaatactcatacaaagatgttaaatacaataatatcagaattcatttataaaataaaatctaaatata-tattgtcatctttaaaac-taaaataggg 19684885  T
Q  280 gtttattaatattatctcaaca 301  Q
     ||||| |||||| ||||||||    
T  19684884 atttatgaatattgtctcaaca 19684863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 181 - 301
Target Start/End: Complemental strand, 19694592 - 19694474
Alignment:
Q  181 aaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaaatagggg 280  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||       |||||||||||| ||||||||||     
T  19694592 aaaatactcatacaaagatgttaaatacaataatatcataattcatttataaaataaaatctaaatata-ttttttcatctttaaaac-taaaataggga 19694495  T
Q  281 tttattaatattatctcaaca 301  Q
    ||||| |||||| ||||||||    
T  19694494 tttatgaatattgtctcaaca 19694474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 158
Target Start/End: Original strand, 20968535 - 20968575
Alignment:
Q  118 aagctcaaatatttttagggaacaagttattgtatcctttt 158  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  20968535 aagctcaaatatttttagggaacaagttattttatcctttt 20968575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 180 - 303
Target Start/End: Complemental strand, 8988107 - 8987986
Alignment:
Q  180 aaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaaataggg 279  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||       |||||||||||| ||||||||||    
T  8988107 aaaaatactcatacaaagatgttaaatacaataatatcataattcatttataaaataaaatctaaatata-ttttttcatctttaaaac-taaaataggg 8988010  T
Q  280 gtttattaatattatctcaacaaa 303  Q
     ||||| |||||||||||||||||    
T  8988009 atttatgaatattatctcaacaaa 8987986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 93 - 310
Target Start/End: Original strand, 28927133 - 28927348
Alignment:
Q  93 atttcttgctctgtccat-gtgtcagaagctcaaatatttttagggaacaagttattgtatccttttgagaatatgtttttgcaactaaaaaatactcac 191  Q
    |||||||||| ||||||| || | |||  |||||||| ||||||||||| ||||||   | |||||||||  || |||  |||| || |||||||||||     
T  28927133 atttcttgctttgtccattgtatgagatactcaaataattttagggaactagttatatcaaccttttgagcttaagttcctgcagct-aaaaatactcat 28927231  T
Q  192 acaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaaataggggtttattaatat 291  Q
    |||||||||||||||||| || ||||| ||| ||||||||||||||||| ||||||||       |||||||||||| ||||||| || ||||| |||||    
T  28927232 acaaagatgttaaatacaatattatcagaatccatttataaaataaaatataaatata-ttttttcatctttaaaac-taaaataaggatttatgaatat 28927329  T
Q  292 tatctcaacaaatacatca 310  Q
    ||||||||||||| |||||    
T  28927330 tatctcaacaaatgcatca 28927348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 180 - 301
Target Start/End: Complemental strand, 9012554 - 9012435
Alignment:
Q  180 aaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaaataggg 279  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||       |||||||||||| ||||||| ||    
T  9012554 aaaaatactcatacaaagatgttaaatacaataatatcataattcatttataaaataaaatctaaatata-ttttttcatctttaaaac-taaaataagg 9012457  T
Q  280 gtttattaatattatctcaaca 301  Q
     ||||| |||||||||||||||    
T  9012456 atttatgaatattatctcaaca 9012435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 181 - 301
Target Start/End: Complemental strand, 9003388 - 9003270
Alignment:
Q  181 aaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaaatagggg 280  Q
    |||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||       |||||||||||| ||||||| ||     
T  9003388 aaaatactcatacaaagatgttaaatacaataatatcataattcatttataaaataaaatctaaatata-ttttttcatctttaaaac-taaaataagga 9003291  T
Q  281 tttattaatattatctcaaca 301  Q
    ||||| |||||||||||||||    
T  9003290 tttatgaatattatctcaaca 9003270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 180 - 301
Target Start/End: Complemental strand, 104371 - 104251
Alignment:
Q  180 aaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaaataggg 279  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||       ||||||||||||||||||||||     
T  104371 aaaaatactcatacaaagatgttaaatacaataatatcagaattcatttataaaatataatttaaatata-atttttcatctttaaaacttaaaatagga 104273  T
Q  280 gtttattaatattatctcaaca 301  Q
     ||| | |||||||||||||||    
T  104272 atttgtgaatattatctcaaca 104251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 172 - 302
Target Start/End: Original strand, 729009 - 729137
Alignment:
Q  172 tgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaactta 271  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||       |||||||||||| ||    
T  729009 tgcagctaaaaaatactcatacaaagatgttaaatacaataatatcagaatccatttataaaataaaattgaaatata-ttttttcatctttaaaac-ta 729106  T
Q  272 aaataggggtttattaatattatctcaacaa 302  Q
    |||||||| ||||| |||||| |||||||||    
T  729107 aaatagggatttatgaatattttctcaacaa 729137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 170 - 300
Target Start/End: Original strand, 19667571 - 19667699
Alignment:
Q  170 tttgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaact 269  Q
    |||||||||||||| | ||||||||||||||||||||||| |||||||| || |||||||||||||||||| ||||||||       ||||||||||| |    
T  19667571 tttgcaactaaaaatttctcacacaaagatgttaaatacaataatatcagaaatcatttataaaataaaatctaaatata-ttttttcatctttaaaa-t 19667668  T
Q  270 taaaataggggtttattaatattatctcaac 300  Q
    ||| |||||| ||||| ||||||||||||||    
T  19667669 taacatagggatttatgaatattatctcaac 19667699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 301
Target Start/End: Original strand, 720029 - 720156
Alignment:
Q  172 tgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaactta 271  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||       |||||||||||| ||    
T  720029 tgcagctaaaaaatactcatacaaagatgttaaatacaataatatcagaatccatttataaaataaaattgaaatata-ttttttcatctttaaaac-ta 720126  T
Q  272 aaataggggtttattaatattatctcaaca 301  Q
    |||||||| ||||| |||||| ||||||||    
T  720127 aaatagggatttatgaatattttctcaaca 720156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 301
Target Start/End: Original strand, 6332746 - 6332873
Alignment:
Q  172 tgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaactta 271  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||       |||||||||||| ||    
T  6332746 tgcagctaaaaaatactcatacaaagatgttaaatacaataatatcagaatccatttataaaataaaattgaaatata-ttttttcatctttaaaac-ta 6332843  T
Q  272 aaataggggtttattaatattatctcaaca 301  Q
    |||||||| ||||| |||||| ||||||||    
T  6332844 aaatagggatttatgaatattttctcaaca 6332873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 6e-26; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 172 - 302
Target Start/End: Complemental strand, 111623 - 111495
Alignment:
Q  172 tgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaactta 271  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||       |||||||||||| ||    
T  111623 tgcagctaaaaaatactcatacaaagatgttaaatacaataatatcagaatccatttataaaataaaattgaaatata-ttttttcatctttaaaac-ta 111526  T
Q  272 aaataggggtttattaatattatctcaacaa 302  Q
    |||||||| ||||| |||||| |||||||||    
T  111525 aaatagggatttatgaatattttctcaacaa 111495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 172 - 302
Target Start/End: Original strand, 3474389 - 3474517
Alignment:
Q  172 tgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaactta 271  Q
    ||||||||||||||||||| |||||||||||||||||| || ||||| ||| |||||||||||||||||| |||||||       |||||||||||| ||    
T  3474389 tgcaactaaaaaatactcatacaaagatgttaaatacaatagtatcagaatccatttataaaataaaattgaaatata-ttttttcatctttaaaac-ta 3474486  T
Q  272 aaataggggtttattaatattatctcaacaa 302  Q
    |||||||| ||||| |||||| |||||||||    
T  3474487 aaatagggatttatgaatattttctcaacaa 3474517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 120719 - 120592
Alignment:
Q  172 tgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaactta 271  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||       |||||||||||| ||    
T  120719 tgcagctaaaaaatactcatacaaagatgttaaatacaataatatcagaatccatttataaaataaaattgaaatata-ttttttcatctttaaaac-ta 120622  T
Q  272 aaataggggtttattaatattatctcaaca 301  Q
    |||||||| ||||| |||||| ||||||||    
T  120621 aaatagggatttatgaatattttctcaaca 120592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 301
Target Start/End: Complemental strand, 14916100 - 14915894
Alignment:
Q  93 atttcttgctctgtccat-gtgtcagaagctcaaatatttttagggaacaagttattgtatccttttgagaatatgtttttgcaactaaaaaatactcac 191  Q
    |||||||||| ||||||| || | |||  |||||||| ||||||||||| ||||||  || |||||||||  || |||  |||| ||||||| ||||||     
T  14916100 atttcttgctttgtccattgtatgagatactcaaataattttagggaactagttatattaaccttttgagcttaagttcctgcagctaaaaa-tactcat 14916002  T
Q  192 acaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaaataggggtttattaatat 291  Q
    |||||||||||||||||| || ||||| ||| ||||||||||||||||| ||||||||       |||||||||||| ||||||| || ||||| |||||    
T  14916001 acaaagatgttaaatacaatattatcagaatccatttataaaataaaatataaatata-ttttttcatctttaaaac-taaaataaggatttatgaatat 14915904  T
Q  292 tatctcaaca 301  Q
    ||||||||||    
T  14915903 tatctcaaca 14915894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 93 - 301
Target Start/End: Complemental strand, 3550 - 3344
Alignment:
Q  93 atttcttgctctgtccat-gtgtcagaagctcaaatatttttagggaacaagttattgtatccttttgagaatatgtttttgcaactaaaaaatactcac 191  Q
    |||||||||| ||||||| || | |||  |||||||| ||||||||||| ||||||   | |||||||||  || |||  |||| || |||||||||||     
T  3550 atttcttgctttgtccattgtatgagatactcaaataattttagggaactagttatatcaaccttttgagcttaagttcctgcagct-aaaaatactcat 3452  T
Q  192 acaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaaataggggtttattaatat 291  Q
    |||||||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||       |||||||||||| ||||||| || ||||| |||||    
T  3451 acaaagatgttaaatacaataatatcagaatccatttataaaataaaatataaatata-ttttttcatctttaaaac-taaaataaggatttatgaatat 3354  T
Q  292 tatctcaaca 301  Q
    ||||||||||    
T  3353 tatctcaaca 3344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 48490 - 48363
Alignment:
Q  172 tgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaactta 271  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||       |||||||||||| ||    
T  48490 tgcagctaaaaaatactcatacaaagatgttaaatacaataatatcagaatccatttataaaataaaattgaaatata-ttttttcatctttaaaac-ta 48393  T
Q  272 aaataggggtttattaatattatctcaaca 301  Q
    |||||||| ||||| |||||| ||||||||    
T  48392 aaatagggatttatgaatattttctcaaca 48363  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 606207 - 606080
Alignment:
Q  172 tgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaactta 271  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||       |||||||||||| ||    
T  606207 tgcagctaaaaaatactcatacaaagatgttaaatacaataatatcagaatccatttataaaataaaattgaaatata-ttttttcatctttaaaac-ta 606110  T
Q  272 aaataggggtttattaatattatctcaaca 301  Q
    |||||||| ||||| |||||| ||||||||    
T  606109 aaatagggatttatgaatattttctcaaca 606080  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 615302 - 615175
Alignment:
Q  172 tgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaactta 271  Q
    |||| |||||||||||||| |||||||||||||||||| |||||||| ||| |||||||||||||||||| |||||||       |||||||||||| ||    
T  615302 tgcagctaaaaaatactcatacaaagatgttaaatacaataatatcagaatccatttataaaataaaattgaaatata-ttttttcatctttaaaac-ta 615205  T
Q  272 aaataggggtttattaatattatctcaaca 301  Q
    |||||||| ||||| |||||| ||||||||    
T  615204 aaatagggatttatgaatattttctcaaca 615175  T

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Target: chr7; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 172 - 296
Target Start/End: Complemental strand, 13946602 - 13946480
Alignment:
Q  172 tgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaactta 271  Q
    |||||||||||| | ||||||||||||||||||||||| |||||||| ||| |||||||||| |||||| |||||||        |||||||||||| ||    
T  13946602 tgcaactaaaaatttctcacacaaagatgttaaatacaataatatcagaatccatttataaactaaaatctaaatat-tttttttcatctttaaaac-ta 13946505  T
Q  272 aaataggggtttattaatattatct 296  Q
    |||||||| ||||| ||||||||||    
T  13946504 aaatagggatttatgaatattatct 13946480  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 174 - 298
Target Start/End: Complemental strand, 13908935 - 13908813
Alignment:
Q  174 caactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaa 273  Q
    |||||||||| | ||||||||||||| ||||||||| |||||||| ||| |||||||||| |||||| ||||||||       |||||||||||| | ||    
T  13908935 caactaaaaatttctcacacaaagatattaaatacaataatatcagaatccatttataaactaaaatctaaatata-ttttttcatctttaaaac-tcaa 13908838  T
Q  274 ataggggtttattaatattatctca 298  Q
    |||||| ||||| ||||||||||||    
T  13908837 atagggatttatgaatattatctca 13908813  T

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Target: scaffold0028 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 180 - 301
Target Start/End: Complemental strand, 81287 - 81167
Alignment:
Q  180 aaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaaataggg 279  Q
    ||||||||||| |||||||| ||||||||| || ||||| ||| |||||||||||||||||| |||||||       |||||||||||| ||||||||||    
T  81287 aaaaatactcatacaaagatattaaatacaatattatcagaatccatttataaaataaaattgaaatatatttttttcatctttaaaac-taaaataggg 81189  T
Q  280 gtttattaatattatctcaaca 301  Q
     ||||| |||||| ||||||||    
T  81188 atttatgaatattttctcaaca 81167  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 172 - 248
Target Start/End: Complemental strand, 31715931 - 31715855
Alignment:
Q  172 tgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatat 248  Q
    |||||||||||| | ||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||||||||    
T  31715931 tgcaactaaaaatttctcacacaacgatgttaaatacaataatattataattcatttataaaataaaatttaaatat 31715855  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 93 - 301
Target Start/End: Complemental strand, 24988712 - 24988505
Alignment:
Q  93 atttcttgctctgtccat-gtgtcagaagctcaaata-tttttagggaacaagttattgtatccttttgagaatatgtttttgcaactaaaaaatactca 190  Q
    |||||||||| ||||||| || | |||  |||||||| |||||||||||| ||||||   |  ||||||||  || |||  |||||||||||| ||||||    
T  24988712 atttcttgctttgtccattgtatgagatactcaaatactttttagggaactagttatatcaatcttttgagcttaagttcctgcaactaaaaa-tactca 24988614  T
Q  191 cacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaaataggggtttattaata 290  Q
     |||||||||||||||||| | |||||| ||| |||||||||||||||||| |||||||       |||||||||||| ||||||| || ||||| ||||    
T  24988613 tacaaagatgttaaatacaatgatatcagaatccatttataaaataaaattgaaatata-ttttttcatctttaaaac-taaaatatggatttatgaata 24988516  T
Q  291 ttatctcaaca 301  Q
    || ||||||||    
T  24988515 ttttctcaaca 24988505  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 121 - 301
Target Start/End: Complemental strand, 21758799 - 21758621
Alignment:
Q  121 ctcaaata-tttttagggaacaagttattgtatccttttgagaatatgtttttgcaactaaaaaatactcacacaaagatgttaaatacagtaatatcac 219  Q
    |||||||| |||||||||||| ||||||   | |||||||||  || |||  |||||||||||| |||||| |||||||||||||||||| ||||||||     
T  21758799 ctcaaatactttttagggaactagttatatcaaccttttgagcttaagttcctgcaactaaaaa-tactcatacaaagatgttaaatacaataatatcat 21758701  T
Q  220 aattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaaataggggtttattaatattatctcaaca 301  Q
    ||| ||||||| |||||||||  |||||||       |||||||||||| |||||||||| ||||| |||||| ||||||||    
T  21758700 aatccatttatgaaataaaatcgaaatata-ttttttcatctttaaaac-taaaatagggatttatgaatattttctcaaca 21758621  T

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Target: scaffold0500 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 93 - 301
Target Start/End: Complemental strand, 3514 - 3307
Alignment:
Q  93 atttcttgctctgtccat-gtgtcagaagctcaaata-tttttagggaacaagttattgtatccttttgagaatatgtttttgcaactaaaaaatactca 190  Q
    |||||||||| ||||||| || | |||  |||||||| |||||| ||||| ||||||   | |||||||||  || |||  |||||||||||| || |||    
T  3514 atttcttgctttgtccattgtatgagatactcaaatactttttatggaactagttatatcaaccttttgagcttaagttcctgcaactaaaaa-taatca 3416  T
Q  191 cacaaagatgttaaatacagtaatatcacaattcatttataaaataaaatttaaatatannnnnnncatctttaaaacttaaaataggggtttattaata 290  Q
     |||||||||||||||||| |||||||| ||| |||||||||||||||||  |||||||       |||||||||||| |||||||||| ||||| ||||    
T  3415 tacaaagatgttaaatacaataatatcataatccatttataaaataaaatcgaaatata-ttttttcatctttaaaac-taaaatagggatttatgaata 3318  T
Q  291 ttatctcaaca 301  Q
    || ||||||||    
T  3317 ttttctcaaca 3307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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