View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3348_low_4 (Length: 486)
Name: NF3348_low_4
Description: NF3348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3348_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 218 - 481
Target Start/End: Complemental strand, 14260024 - 14259761
Alignment:
| Q |
218 |
ggtagaagcaccgtgattctgaacggtaggtatccctgaatttaattaaatacattagatatgagtcttaacctttgttagtaaaattgtgaaatctgtt |
317 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14260024 |
ggtataagcaccgtgattctgaacggtaggtatccctgaatttaattaaatacattagatatgagtcttaacctttgttagtaaaattgtgaaatctgtt |
14259925 |
T |
|
| Q |
318 |
aattacttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgttcaagtcatccacaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14259924 |
aattacttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgttcaagtcatccacaa |
14259825 |
T |
|
| Q |
418 |
aatgatcatagagaatacatttgaatcgataactaaaatatatcaaaaacattttcatatcact |
481 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14259824 |
aatgatcatggagaatacatttgaatcgataactaaaatataccaaaaacattttcatatcact |
14259761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 14260296 - 14260093
Alignment:
| Q |
20 |
ctaagtgcagatagagtggttactcctattgagtacatccattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtg |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
14260296 |
ctaagtgcagatagagtggttactcctattgagtacatccattgatctatattatgaaaccaagtttcttccggactctcatatatacccttgtacggtg |
14260197 |
T |
|
| Q |
120 |
aaaatgttttgtccatcatcctgaatataaaaaataaattgaatagatttttnnnnnnnntaatatctttttatacattgtttataataaaaataaacgg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
14260196 |
aaaatgttttgtccatcatcctgaatataaaaaataaattgaatagatttttataaaaaataatatctttttatacattgtttataataaaaataaacgg |
14260097 |
T |
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| Q |
220 |
taga |
223 |
Q |
| |
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|||| |
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| T |
14260096 |
taga |
14260093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 324 - 473
Target Start/End: Complemental strand, 14265444 - 14265298
Alignment:
| Q |
324 |
ttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgttcaagtcatccacaaaatgat |
423 |
Q |
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|||| ||||||||||| |||||||||||||||||| ||||||| || ||||||| |||||||| ||||||||||||| |||||||||| |||||||| | |
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| T |
14265444 |
ttacatttccataactcgatctttccaagaaaaaccaccacacgtgaattgtcaaaagatcca--tagtataaaatcggtcaagtcatctacaaaatggt |
14265347 |
T |
|
| Q |
424 |
catagagaatacatttgaatcgataactaaaatatatcaaaaacattttc |
473 |
Q |
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||| |||||||| |||||||||||||| ||||||| || |||||||||| |
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| T |
14265346 |
catgaagaatacacttgaatcgataact-aaatataccataaacattttc |
14265298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 324 - 454
Target Start/End: Original strand, 22146052 - 22146182
Alignment:
| Q |
324 |
ttacctttccataacttgatctttccaagaaaaactaccacacatgcattgtcagaagatccagatagtataaaatcgttcaagtcatccacaaaatgat |
423 |
Q |
| |
|
||||||| |||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||| | |
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| T |
22146052 |
ttaccttaccataatttgatctttccaaggaaaactaccacacatgcattgtcagaagatcctgatagtataaaatcggtgaagtcatccacaaaacggc |
22146151 |
T |
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| Q |
424 |
catagagaatacatttgaatcgataactaaa |
454 |
Q |
| |
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||| ||||||||| |||||||| || ||||| |
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| T |
22146152 |
catggagaatacacttgaatcggtatctaaa |
22146182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 22145724 - 22145805
Alignment:
| Q |
70 |
attatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaa |
151 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| |||||| |||||||||||||||||| |||| ||||||||||| |
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| T |
22145724 |
attatgaaaccaagtatcttcacgactttcatatatagccttgtaaagtgaaaatgttttgtccaacatcttgaatataaaa |
22145805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 7558952 - 7558852
Alignment:
| Q |
59 |
cattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaaaataaat |
158 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||||||||||||| |||| |||||||| ||||||||| ||| ||||||||||| |||||| |
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| T |
7558952 |
cattgatctatattatgaaaccaattatcttcatgactttcatatatagtattgtaaagtgaaaatattttgtccaagatcatgaatataaaacataaat |
7558853 |
T |
|
| Q |
159 |
t |
159 |
Q |
| |
|
| |
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|
| T |
7558852 |
t |
7558852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 59 - 159
Target Start/End: Complemental strand, 19723967 - 19723867
Alignment:
| Q |
59 |
cattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaaaataaat |
158 |
Q |
| |
|
|||| ||||||||||||||||||| | ||||| |||||||||||||| |||| |||||||||||||||||| ||| ||||||||||| |||||| |
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| T |
19723967 |
cattaatctatattatgaaaccaattatcttcacgactttcatatatagtattgtaaagtgaaaatgttttgtccaagatcatgaatataaaacataaat |
19723868 |
T |
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| Q |
159 |
t |
159 |
Q |
| |
|
| |
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| T |
19723867 |
t |
19723867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 8771764 - 8771864
Alignment:
| Q |
59 |
cattgatctatattatgaaaccaagtttcttccggactttcatatatacccttgttcggtgaaaatgttttgtccatcatcctgaatataaaaaataaat |
158 |
Q |
| |
|
|||||||||||||||||||||||| | ||||| |||||||||||| | |||| |||||||| ||||||||| ||| ||||||||||| |||||| |
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| T |
8771764 |
cattgatctatattatgaaaccaattatcttcatgactttcatataaagtattgtaaagtgaaaatattttgtccaagatcatgaatataaaacataaat |
8771863 |
T |
|
| Q |
159 |
t |
159 |
Q |
| |
|
| |
|
|
| T |
8771864 |
t |
8771864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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