View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3349_high_11 (Length: 237)
Name: NF3349_high_11
Description: NF3349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3349_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 108 - 222
Target Start/End: Original strand, 9516604 - 9516718
Alignment:
| Q |
108 |
acttaaagtattcttcccatttcaatatatgttaatcattattagtttgttgagaataatatcttattaggtgttatggaattgcacttcttgatatcta |
207 |
Q |
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| T |
9516604 |
acttgaagtattcttcccatttcaatatatgttaatcattattagttggttgagaataatatcttattaggtgttatggaattgcactacttgatatcta |
9516703 |
T |
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| Q |
208 |
aaatttagaattttt |
222 |
Q |
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| T |
9516704 |
aaatttagaactttt |
9516718 |
T |
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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 9516501 - 9516579
Alignment:
| Q |
1 |
tagtcatatacttgaataaaaaatcttcatcatttagaataatagtgagaatatgaaaattttcatttggtttatgtct |
79 |
Q |
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| T |
9516501 |
tagtcatatacttgaataaataatcttcatcatttagaataatagtgagaatatgaacattttcatttggtttttgtct |
9516579 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 40818980 - 40818871
Alignment:
| Q |
113 |
aagtattcttcccatttcaatatatgttaatcattattagtttgttgagaataatatcttattaggtgttatggaattgcacttcttgatatctaaaatt |
212 |
Q |
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| T |
40818980 |
aagtattctctccattttaatatatgttaatcattattaagtggttgagaatagtatcttcttaggtgttatggacttgcacaacttgatatctaaaatt |
40818881 |
T |
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| Q |
213 |
tagaattttt |
222 |
Q |
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| T |
40818880 |
tagaactttt |
40818871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 40819085 - 40819016
Alignment:
| Q |
4 |
tcatatacttgaataaaaaatcttcatcatttagaataatagtgagaatatgaaaattttcatttggttt |
73 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
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| T |
40819085 |
tcatatacttgaataaaaaatcttcatcatttaaaataatagtgagaaaatgaatattttcatttggttt |
40819016 |
T |
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