View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3349_high_4 (Length: 385)
Name: NF3349_high_4
Description: NF3349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3349_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 9e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 8 - 203
Target Start/End: Original strand, 4571903 - 4572092
Alignment:
| Q |
8 |
aagcaaaggagtaccttttctgagacctgtttggtaaagctgaatttcttgcagaagaaggtgagaatgcatttttctcaccatcctgcaagtttgtgca |
107 |
Q |
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| T |
4571903 |
aagcaaaggagtaccttttctgagacctgtttggtaaagctgaatttcttgcagaagaaggtgagaatgtatttttctcaccatcttgcaagtttgtgca |
4572002 |
T |
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| Q |
108 |
acaaggttgtgattgtgatgcatctttttccatcacttgcattgatgagagcttaagaaatgatgaatctttagcataaccaagagtgagtgatga |
203 |
Q |
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| T |
4572003 |
acaaggttgtgattgtgatgga------tccatcacttgcattgatgagagcttaagaaatgatgaatctttagcataaccaagagtgagtgatga |
4572092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 265 - 370
Target Start/End: Original strand, 4572154 - 4572259
Alignment:
| Q |
265 |
ccaggtggaccaagtctgagctccaacttcctctcctctaaagaacacttgtggcttctttgccacatcttgttgcttacaaaatttcttcaactttctt |
364 |
Q |
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| T |
4572154 |
ccaggtggaccaagtctaagctccaacttcctctcctctaaagaacacttgtggcttctttgccacatcttattgcttacaaaatttcttcaactttctt |
4572253 |
T |
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| Q |
365 |
attctt |
370 |
Q |
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| T |
4572254 |
attctt |
4572259 |
T |
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