View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3349_high_8 (Length: 307)
Name: NF3349_high_8
Description: NF3349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3349_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 4 - 286
Target Start/End: Original strand, 4065877 - 4066144
Alignment:
| Q |
4 |
tgtcattagcatcatatgccataccattcttctggtggttctcaagttgagagactcgacctccctcaacttgtaggtagacattactcgatttagcaag |
103 |
Q |
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| T |
4065877 |
tgtcattagcatcatatgccacagcattcttctggaggttctcaagttgagagactagacctctctcaacttgtaggtagacattactcgatttagcaag |
4065976 |
T |
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| Q |
104 |
aacacatcttccattcactttttgtccaaatattgagcttaaagaccagcttggttgaatctttatttcatcgtgataactcataccggctctctgaaca |
203 |
Q |
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| T |
4065977 |
aacacatcttccattcactttttgtccaaatattgagcttaaagaccagcttggttgaatctttatttcatcatgataactcatac-------------- |
4066062 |
T |
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| Q |
204 |
tcggctctctgaacattaggctgaagtacaactgtaagtgtttgttctagaataactccagaatctaacccatctgcaggagc |
286 |
Q |
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| T |
4066063 |
-cggctctctgaacattaggctgaagtacaactgtaagtgtttgttctagaataactccagaatctaacccatctgcaggagc |
4066144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 2 - 287
Target Start/End: Original strand, 4060702 - 4060972
Alignment:
| Q |
2 |
tgtgtcattagcatcatatgccataccattcttctggtggttctcaagttgagagactcgacctccctcaacttgtaggtagacattactcgatttagca |
101 |
Q |
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| T |
4060702 |
tgtgtcattagcagcatatgcagcagtattcttctggagattctcaagttgattgactagatctctctccacttgaaggtagacattactcgacttagca |
4060801 |
T |
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| Q |
102 |
agaacacatcttccattcactttttgtccaaatattgagcttaaagaccagcttggttgaatctttatttcatcgtgataactcataccggctctctgaa |
201 |
Q |
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| T |
4060802 |
agaacacacctaccattgatttttcgtccaaatattgagctcagagaccagcttggttgaatctttatttcatcgggagagctcaaaccagctctctgaa |
4060901 |
T |
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| Q |
202 |
catcggctctctgaacattaggctgaagtacaactgtaagtgtttgttctagaataactccagaatctaacccatctgcaggagct |
287 |
Q |
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| T |
4060902 |
tatcg---------------ggctgaagtacaactgtaagtgtttgttctagaataattcctgattctaacccatctgcaagagct |
4060972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 287
Target Start/End: Complemental strand, 21286246 - 21286058
Alignment:
| Q |
84 |
acattactcgatttagcaagaacacatcttccattcactttttgtccaaatattgagcttaaagaccagcttggttgaatctttatttcatcgtgataac |
183 |
Q |
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|||||||| || |||||||||||||| | ||||| | |||| ||||||||||||||| | ||| ||||| ||||||||||||||||||||| || | | |
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| T |
21286246 |
acattacttgacttagcaagaacacacttaccattgatttttcatccaaatattgagctcagagagcagctaggttgaatctttatttcatcgggagagc |
21286147 |
T |
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| Q |
184 |
tcataccggctctctgaacatcggctctctgaacattaggctgaagtacaactgtaagtgtttgttctagaataactccagaatctaacccatctgcagg |
283 |
Q |
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||||||| |||||||||| ||| |||||||||||||| ||||||||||||||||||||| | ||| |||||||||| |||| |||| |
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| T |
21286146 |
tcataccagctctctgaatatc---------------aggctgaagtacaagtgtaagtgtttgttctagaatgattcctgaatctaacctatcttcagg |
21286062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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