View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3349_low_1 (Length: 554)
Name: NF3349_low_1
Description: NF3349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3349_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 20 - 539
Target Start/End: Original strand, 4243392 - 4243911
Alignment:
| Q |
20 |
ctgatcccatagtttcacatgcagaaagttttctcaccattgcttgatcagccatcattttcttcattgaataagcgagtgtcaatgtcacagctaatgg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243392 |
ctgatcccatagtttcacatgcagaaagttttctcaccattgcttgatcagccatcattttcttcattgaataagcgagtgtcaatgtcacagctaatgg |
4243491 |
T |
|
| Q |
120 |
taaaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcattcatcacatcatcgaaactagtctttctaccgttg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4243492 |
taaaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcattcatcacatcatcgaaactagtctttctaccgttg |
4243591 |
T |
|
| Q |
220 |
aactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4243592 |
aactctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccga |
4243691 |
T |
|
| Q |
320 |
ttgaggatgtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgttgtgttcatacc |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4243692 |
ttgaggatgtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgttgtgttcatacc |
4243791 |
T |
|
| Q |
420 |
aaccgatgtaacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctctacatgatcgctctca |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4243792 |
aaccgatgtaacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctctacatgatcgctctca |
4243891 |
T |
|
| Q |
520 |
ccggtcatgctcgattcatc |
539 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
4243892 |
ccggtcatgctcgattcatc |
4243911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 22 - 539
Target Start/End: Original strand, 6186450 - 6186967
Alignment:
| Q |
22 |
gatcccatagtttcacatgcagaaagttttctcaccattgcttgatcagccatcattttcttcattgaataagcgagtgtcaatgtcacagctaatggta |
121 |
Q |
| |
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||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| | |
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|
| T |
6186450 |
gatcccatagtctcacatgcagagagttttctcaccattgcttcatcagccatcattttcttcattgaatatgcaagtgtcaatgtcacagctaatggca |
6186549 |
T |
|
| Q |
122 |
aaccctcggggatagcaacaacgacaatagtaacagcatcagcaataattccaataactgcattcatcacatcatcgaaactagtctttctaccgttgaa |
221 |
Q |
| |
|
||||||| || || |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| ||||| |
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|
| T |
6186550 |
aaccctcaggaattgcaacaacaacaatagtaacagcatcagcaataattccaataattgcattcatcacatcatcaaaactcgtctttctaccattgaa |
6186649 |
T |
|
| Q |
222 |
ctctctaactccgttatcagtctttgtgttcccggtgaaatatcgaatcaacagaacaacaaggactaaaaatgcgacagccaaaccaacctttccgatt |
321 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||| ||| |||||||| ||||||||||| |||||| |||||||||| |||||||| |
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|
| T |
6186650 |
ttctctaactccggcatcagtctttgtattcccggtgaaatatcgaaccaagagaacaaccaggactaaaaacgcgacaaccaaaccaacttttccgatc |
6186749 |
T |
|
| Q |
322 |
gaggatgtaagtttattcaaccttgtttgcaaaggggtttcttcgttgatgtcattgcttatggaactcatcatttgtccccatgttgtgttcataccaa |
421 |
Q |
| |
|
|| ||||| || ||||||||||||||||||||||| ||||| || | ||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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|
| T |
6186750 |
gatgatgttagcttattcaaccttgtttgcaaaggtgtttcctcatcgatgtcattgcttatcgaactcatcatttgtccccatgttgtgttcataccga |
6186849 |
T |
|
| Q |
422 |
ccgatgtaacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaaggatgaaagttttgattaatctctacatgatcgctctcacc |
521 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |
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|
| T |
6186850 |
ccgatgtaacaagcatttttgcatatccatcgacaacttttgtcccggaaagcaaaaaaggatgaaaattttgatttatctctacatgatcactctcacc |
6186949 |
T |
|
| Q |
522 |
ggtcatgctcgattcatc |
539 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
6186950 |
ggtcatgctcgattcatc |
6186967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 152
Target Start/End: Original strand, 38358063 - 38358195
Alignment:
| Q |
20 |
ctgatcccatagtttcacatgcagaaagttttctcaccattgcttgatcagccatcattttcttcattgaataagcgagtgtcaatgtcacagctaatgg |
119 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||||| || ||||| ||||||||| | ||||| || ||||| || || | ||||||||| ||||| |
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|
| T |
38358063 |
ctgatcccatagtttcacaagctgaaagtttcctcaccatagcatgatctgccatcattcttttcatggagtaagcaagagttagtgtcacagccaatgg |
38358162 |
T |
|
| Q |
120 |
taaaccctcggggatagcaacaacgacaatagt |
152 |
Q |
| |
|
|||||||| ||||| ||||| || |||||||| |
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|
| T |
38358163 |
caaaccctcagggatggcaacgaccacaatagt |
38358195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 483
Target Start/End: Original strand, 38358431 - 38358526
Alignment:
| Q |
388 |
ctcatcatttgtccccatgttgtgttcataccaaccgatgtaacgagcatttttgcatatccatcgacaacttttgttccggaaagcaaaaaagga |
483 |
Q |
| |
|
||||||||||||||||||| |||||| | || || ||||| || ||||| | ||||||||||| |||||||||| ||||| | |||||||||| |
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|
| T |
38358431 |
ctcatcatttgtccccatgatgtgtttttgcccacagatgttacaagcatctgagcatatccatccacaacttttgcgccggacaacaaaaaagga |
38358526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 155
Target Start/End: Original strand, 39951669 - 39951752
Alignment:
| Q |
72 |
catcattttcttcattgaataagcgagtgtcaatgtcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaac |
155 |
Q |
| |
|
||||||||||||||||| | | || || ||||||| ||||||||||||||||||||||| | |||||| ||||| || ||||| |
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|
| T |
39951669 |
catcattttcttcattgcaaatgcaagactcaatgttacagctaatggtaaaccctcgggaacagcaacgacgacgattgtaac |
39951752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 101 - 159
Target Start/End: Complemental strand, 47487560 - 47487502
Alignment:
| Q |
101 |
tcaatgtcacagctaatggtaaaccctcggggatagcaacaacgacaatagtaacagca |
159 |
Q |
| |
|
|||||||||||||||| |||||||| || || | ||||||||| ||||| ||||||||| |
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|
| T |
47487560 |
tcaatgtcacagctaaaggtaaaccttcaggaacagcaacaacaacaattgtaacagca |
47487502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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