View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3349_low_10 (Length: 296)
Name: NF3349_low_10
Description: NF3349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3349_low_10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 8 - 296
Target Start/End: Complemental strand, 3233692 - 3233403
Alignment:
| Q |
8 |
agaaaagaagtttaaacacacaagaaagactggaacgaaagagnnnnnnnnn-tgcaatgaagaaagtnnnnnnnngagtccttctttatagagacgaat |
106 |
Q |
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| T |
3233692 |
agaaaagaagtttaaacacacaagaaagactggaacgaaagagaaaaaaaaaatgcaatgaagaaagtaaaaaaaagagtccttctttatagagacgaat |
3233593 |
T |
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| Q |
107 |
tctcctcaaaagtaacgatgtttagtatcgaaaagaaacaacaaaccatattatatatgcatattggcttattatgctatcaattaatattaagggatgg |
206 |
Q |
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| T |
3233592 |
tctcctcaaaagtaacgatgtttagtatcgaaaagaaacaacaaaccatattatatatgcatattggcttattatgctatcaattaatattaagggatgg |
3233493 |
T |
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| Q |
207 |
gtagctcacttggttgagctagagattaaaggagtcaacgagttacatttttaaggttcgatttacatgaagaaaatattaacagaacaa |
296 |
Q |
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| T |
3233492 |
atagctcacttggttgagctagagattaaaggagtcaaagagttacatttttaaggttcgatttacatgaagaaaatattaacagaacaa |
3233403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 15861759 - 15861731
Alignment:
| Q |
199 |
agggatgggtagctcacttggttgagcta |
227 |
Q |
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| T |
15861759 |
agggatgggtagctcacttggttgagcta |
15861731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 49437663 - 49437715
Alignment:
| Q |
200 |
gggatgggtagctcacttggttgagcta-gagattaaaggagtcaacgagtta |
251 |
Q |
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| T |
49437663 |
gggataggtagctcacttggttgagttacgagattaaaggagttaaggagtta |
49437715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 32676167 - 32676219
Alignment:
| Q |
200 |
gggatgggtagctcacttggttgagcta-gagattaaaggagtcaacgagtta |
251 |
Q |
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| T |
32676167 |
gggatgggtagttcatttggttgagctatgggattaaaggagttaacgagtta |
32676219 |
T |
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