View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3349_low_2 (Length: 482)
Name: NF3349_low_2
Description: NF3349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3349_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 42 - 386
Target Start/End: Complemental strand, 5262620 - 5262276
Alignment:
| Q |
42 |
ccttcaagaatcacacaattttgattttggatggtgaaagaataatttttgtgaagtaacctaactatgaaaacgaaggagcttctcaattagacttatt |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
5262620 |
ccttcaagaatcacacaattttgattttggatggtgaaagaacaatttttgtgaagtaacctaactatgaaaacgaaggagtttctcggttagacttatt |
5262521 |
T |
|
| Q |
142 |
tacaagaaggtttcagattatatagtctaaaaatctttaaataaaagtttaaattatataatctgaaggagagtatttttagaatattagaggacgcttg |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5262520 |
tacaagaaggtttcagattatatagtctaaaagtctttaaataaaagtttaaattatataatcagaaggagagtatttttagaatattagaggacgcttg |
5262421 |
T |
|
| Q |
242 |
agaagagagaagagcaataacgaagcattacaaaggcacgggttggccacgactcatcccattcaaaaggaannnnnnnnnc-acaggtaaatgacaaaa |
340 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||||| ||| |
|
|
| T |
5262420 |
agaagagagaagagcaatagcgaagcattacaaaggcacgggttgaccacgactcatcccattcaaaaggaatttttttttctacagataaatgac-aaa |
5262322 |
T |
|
| Q |
341 |
aatatctctgattttaaaacaaattttatgctggcccatccaaccc |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5262321 |
aatatctctgattttaaaacaaattttatgctggcccatccaaccc |
5262276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 420 - 474
Target Start/End: Complemental strand, 5262281 - 5262227
Alignment:
| Q |
420 |
caacctattgtcttcttgtccctctttatgtatgtgcccacacttccttcttctc |
474 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5262281 |
caacccattgtcttcttgtccctctttatgtatgtgcccacacttccttcttctc |
5262227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University