View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3349_low_7 (Length: 322)
Name: NF3349_low_7
Description: NF3349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3349_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 23 - 314
Target Start/End: Complemental strand, 12499061 - 12498773
Alignment:
| Q |
23 |
tatgttacaacatatttagattctaggttgtgcaagatgaaagaaatatcaagtgaaagaaagataataaaggggtataagagtcagtcatattgtgaaa |
122 |
Q |
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| T |
12499061 |
tatgttacaacatatttagattctaggttgtgcaagatgaaagcaacatcaagtgaaaaaaa-ataataaaggggtataagagtcagtcatattatgaaa |
12498963 |
T |
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| Q |
123 |
ccatagtgaaacaaagatgaaaccaacaaaatttgtttatgagtgtgtgtgatgtgtaannnnnnnnnnagaggagtgtgaatgtgttattgtgaaagaa |
222 |
Q |
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| T |
12498962 |
ccatagtgaaacaaagatgaaaccaacaaaatttgtttatgagtgtgtgtgatgtgtaa--ttttttttagaggagtgtgaatgtgtttttgtgaaagaa |
12498865 |
T |
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| Q |
223 |
tggtgtctaatctatgtttctatgagtttacatatcaataccaaccgatagaattggggtacataaggtagatttaagtttgtctccaacgt |
314 |
Q |
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| T |
12498864 |
tggtggctaatctatgtttttatgagtttacatttcaataccaaccgatagaattgggatacgtaaggtagatttaagtttgtctccaacgt |
12498773 |
T |
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