View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3349_low_9 (Length: 303)
Name: NF3349_low_9
Description: NF3349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3349_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 41456082 - 41456292
Alignment:
| Q |
8 |
agaagcaaaggcacagatgaagttgataatccaacctaaaaaatttgtagtgtgttggctagaaatatttttattaggtgtgtctaatacgaaaaatatt |
107 |
Q |
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| T |
41456082 |
agaatcaaaggcatagatgaagttgataatccaacctcaaagatttgtagtgtgttggctagaaatatttttattaggtgtgtctaatatgaaaaatatt |
41456181 |
T |
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| Q |
108 |
tgggcacgcaaacaaatacaaacttaaatagaaattatttggtcactacatttaacagaaaatacttgggaggtttcctttt-ccgtacattgagaaaag |
206 |
Q |
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| T |
41456182 |
taggcacgcgcacaaatacaaacttaaataaaaattatttggtcactacatttaacagaaaatacttgggaggttttcttttcccgtacattgagaaaat |
41456281 |
T |
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| Q |
207 |
gtaatgaatat |
217 |
Q |
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| T |
41456282 |
gtaatgaatat |
41456292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 41456338 - 41456407
Alignment:
| Q |
214 |
atatatagacttttcctccttcacatgtaaa-tttatcttgtaagctgactcctctgatagttttagaca |
282 |
Q |
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| T |
41456338 |
atatatggacttttcctccttcacatgtaaattttatcttgtaagctgactcctttgatggttttagaca |
41456407 |
T |
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