View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3350_high_14 (Length: 298)
Name: NF3350_high_14
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 49554208 - 49554498
Alignment:
| Q |
1 |
atggtaactagttttcagcaatttcatatgagatttcagtttcctacnnnnnnngttaaaaatagtcctatgttttaagaacaatatagctgactatcct |
100 |
Q |
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| T |
49554208 |
atggtaactagttttcagcaatttcatatgagatttcagtttcctacaaaaaaaattaaaaatagtcctatgttttaagaacaatatagctgactatcct |
49554307 |
T |
|
| Q |
101 |
aacattctcattctagcctctgctgtaagtttatgaaatgttctaccgatgaaaaagtaagacttgcagttgcagataacaaagatgacacttattattg |
200 |
Q |
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| T |
49554308 |
aacattctcattctagcctctgctgtaagtttatgaaatgttctaccgatgaaaaagtaagacttgcagttgcagataacaaagatgacacttattattg |
49554407 |
T |
|
| Q |
201 |
tggt---tttacctgattgtgtaacttattaatcaaattttgttggctcaattccttattgttttgccattcccttgaaacacttgttcat |
288 |
Q |
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| T |
49554408 |
tggtaaaaccacctgattgtgtaacttattaatcaaattttgttggctcaattccttgttgttttgccattcccttgaaacacttgttcat |
49554498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 69 - 288
Target Start/End: Complemental strand, 8557429 - 8557205
Alignment:
| Q |
69 |
tatgttttaagaacaatata----gctgactatcctaacattctcattctagcctctgctgtaagtttatgaaatgttctaccgatgaaaaagtaagact |
164 |
Q |
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|||||||||||||||||||| | |||||||||||||||||| | ||| || || || ||||||||||||||||||||||| |||| | | | ||| |
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| T |
8557429 |
tatgttttaagaacaatatacttagatgactatcctaacattctgaatcttgcgtcaactagaagtttatgaaatgttctaccgacgaaataattaaact |
8557330 |
T |
|
| Q |
165 |
tgcagttgcagataacaaagatgacacttattattgtggttttacctgattgtgtaacttattaatcaaattttgttggctcaa-ttccttattgttttg |
263 |
Q |
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|||||||||||||||||| ||||||||||| || |||| |||||| ||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |
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| T |
8557329 |
tgcagttgcagataacaaggatgacacttagtagtgtgattttacttgattgtgtaacttaataatcaaattttgttgactcaacttccttattgttttg |
8557230 |
T |
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| Q |
264 |
ccattcccttgaaacacttgttcat |
288 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
8557229 |
tcattcccttgaaacacttgttcat |
8557205 |
T |
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Back To:
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