View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3350_high_23 (Length: 238)

Name: NF3350_high_23
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3350_high_23
NF3350_high_23
[»] chr6 (5 HSPs)
chr6 (81-229)||(13910592-13910741)
chr6 (162-202)||(14024263-14024303)
chr6 (161-202)||(14109243-14109284)
chr6 (161-211)||(14106474-14106524)
chr6 (21-58)||(13910743-13910780)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 81 - 229
Target Start/End: Complemental strand, 13910741 - 13910592
Alignment:
Q  81 atgatagtgtaagctgtatatatgttctaaagtta-tttttatgatatgatatttcaagtttgaaaattttaagaaaaaattattttagactttatatct 179  Q
    ||||||||||||||| |||||| |||| ||||||| ||||| ||||||  ||||||| |||||||| || ||| ||||   |||||||||||||||||||    
T  13910741 atgatagtgtaagctttatataggttcaaaagttaatttttgtgatatagtatttcatgtttgaaagttgtaaaaaaattatattttagactttatatct 13910642  T
Q  180 aaagtggttaacacttaaactatgatacagggaatagtgtgttgatgatg 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  13910641 aaagtggttaacacttaaactatgatacagggaatagtgtgttggtgatg 13910592  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 162 - 202
Target Start/End: Complemental strand, 14024303 - 14024263
Alignment:
Q  162 attttagactttatatctaaagtggttaacacttaaactat 202  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  14024303 attttagactttatatctaaagtggttaatacttaaactat 14024263  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 202
Target Start/End: Complemental strand, 14109284 - 14109243
Alignment:
Q  161 tattttagactttatatctaaagtggttaacacttaaactat 202  Q
    ||||||||||||||||| ||||| ||||||||||||||||||    
T  14109284 tattttagactttatatataaagaggttaacacttaaactat 14109243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 14106524 - 14106474
Alignment:
Q  161 tattttagactttatatctaaagtggttaacacttaaactatgatacaggg 211  Q
    ||||||||||| ||||||||| |||||||||||| ||||||| ||| ||||    
T  14106524 tattttagactatatatctaaggtggttaacactcaaactattatataggg 14106474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 13910780 - 13910743
Alignment:
Q  21 ttcttatttccttgaaaataagcatatgtttttataca 58  Q
    |||| ||||||||||||||||||||||||||||| |||    
T  13910780 ttctcatttccttgaaaataagcatatgtttttacaca 13910743  T

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