View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3350_high_25 (Length: 219)
Name: NF3350_high_25
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 3760543 - 3760327
Alignment:
| Q |
1 |
tactcttctttctatcatattcttgatcatttcnnnnnnntagcagattctatgacaactacaaaaatacacaatacacatacaccaagacacgtacaca |
100 |
Q |
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| T |
3760543 |
tactcttctttctatcatattcttgatcatttcaaaaaaatagcagattctatgacaactacaaaaatacacaatacacatacaccaagacacgtacaca |
3760444 |
T |
|
| Q |
101 |
tttcaatgaaaaacatcgctttaccaaatgagaggctttagattagttatatgttctcacctccacatgatttagcaatgtccttttcatcatactcaac |
200 |
Q |
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||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| ||||||||| |
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| T |
3760443 |
tttcaatgaaaaacatcgctttacc-aataagaggctttagattagttatatgttctcacctccacataatttagcaatgtcattgtcatgatactcaac |
3760345 |
T |
|
| Q |
201 |
tcattaaaaacatactcc |
218 |
Q |
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|||||||||||||||||| |
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| T |
3760344 |
tcattaaaaacatactcc |
3760327 |
T |
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