View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3350_high_3 (Length: 492)
Name: NF3350_high_3
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 485
Target Start/End: Complemental strand, 33193845 - 33193369
Alignment:
| Q |
18 |
agtgctttcataacacccactagaca-------ctagaaagcatatatgaattctgaaaactcaccctcaaccattacaataatgacttgaagagcannn |
110 |
Q |
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| T |
33193845 |
agtgctttcataacacccactagacagtagacactagaaagcatatatgaattctgaaaactcaccctcaaccattacaataatgacttgaagagcattt |
33193746 |
T |
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| Q |
111 |
nnnnn-cactactagtagtatcaaagagtatagc------atatagaaatagcaaaggaaatgtgggttgctccaataccacctactaaatgactatata |
203 |
Q |
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| T |
33193745 |
ttttttcactactagtagtatcaaagagtatagctatagcatataaaaatagcaaaggaaatgtgggttgctccaataccacctactaaatgactatata |
33193646 |
T |
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| Q |
204 |
tatgcaaaaataaattggttttgttgaataacgtgaatccaacgcgattcccatataagtaccactaattaatcacatcacaacacaacacaacattaaa |
303 |
Q |
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| T |
33193645 |
tatgcaaaaataaattggttttgttgaataacgtgaatccaacgcgattcccatataagtaccactaattaatcacatcacaacacaaca-----ttaaa |
33193551 |
T |
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| Q |
304 |
cattgtcgtgacatgtttttaggtatgttatccaaaagtgtaattgcatgcatatgatatgacacagctactactagtactaagcttagatccattccca |
403 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
33193550 |
catggtcgtgacatgtttttaggtatgttatccaaaagtgtaattgcatgcatatgatatgacacagctactactagtactaagcttagatctattccca |
33193451 |
T |
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| Q |
404 |
cactactctgtcccaagacaaacaggtagtaggttttggtttcccaagatgttcttttccaacttgcgttatcttcatctca |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
33193450 |
cactactctgtcccaagacaaacaggtagtaggttttggtttcccaagatgttcttttccaacttgcgtcatcttcttctca |
33193369 |
T |
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