View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3350_high_5 (Length: 433)
Name: NF3350_high_5
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 89 - 286
Target Start/End: Original strand, 53940765 - 53940962
Alignment:
| Q |
89 |
taatgatgtctcggtaagaattaaattaactcgaaaggtttgctctaactcgaaaggatgattgattatttttgttcatgttgtgggaatgcttatgaag |
188 |
Q |
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| T |
53940765 |
taatgatgtctcggtaagaattaaattaactcgaaaggtttgctctaactcgaaaggatgattgattatttttgttcatgttgtgggaatgcttatgaag |
53940864 |
T |
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| Q |
189 |
atttggatcatgttttcaaagattgcacttggacnnnnnnnnggtgtagcttcactctcatttgggtattcggtttgaggatccttcccttctttttt |
286 |
Q |
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| T |
53940865 |
atttggatcatgttttcaaagattgcacttggacaaaaaaaaggtgtagcgtccctctcatttgggtattcggtttgaggatccttcccttctttttt |
53940962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 302 - 421
Target Start/End: Original strand, 53941138 - 53941257
Alignment:
| Q |
302 |
catgtcatatcttaatcatccttagatatcatctcgtatgttctttctttatggtatgacatttagtttgctcatggcaagtcttgttttgatggaaatg |
401 |
Q |
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| T |
53941138 |
catgtcatatcttaatcatccttagatatcatctcgtatgttctttctttatgctatgacatttagtttgctcatggcaagtcttgttttgatggaaatg |
53941237 |
T |
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| Q |
402 |
cctgcaaaggatattcttcg |
421 |
Q |
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| T |
53941238 |
cctgcgaaggatattgttcg |
53941257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 53940336 - 53940398
Alignment:
| Q |
18 |
attccaagccttgtgtttgtcaatagttaatggaaaatcatacaaatcattgaatatataatg |
80 |
Q |
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| T |
53940336 |
attccaagccttgtgtttgtcaatagttaatggaaaaccatacaaatcattgaatatataatg |
53940398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 239 - 354
Target Start/End: Complemental strand, 24200145 - 24200031
Alignment:
| Q |
239 |
ttcactctcatttgggtattcggtttgaggatccttcccttcttttttataccttggcttgaacatgtcatatcttaatcatccttagatatcatctcgt |
338 |
Q |
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|||||||| |||||| |||| ||||||||||||||||||| ||| ||| ||| |||| |||||||||| ||| ||||| |||||| ||||||| | |
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| T |
24200145 |
ttcactcttctttgggggttcgatttgaggatccttcccttcctttc-atatcttagcttaaacatgtcatttctcgttcatcattagatgtcatctcat |
24200047 |
T |
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| Q |
339 |
atgttctttctttatg |
354 |
Q |
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|||||||||||||||| |
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| T |
24200046 |
atgttctttctttatg |
24200031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 242 - 374
Target Start/End: Original strand, 5554230 - 5554361
Alignment:
| Q |
242 |
actctcatttgggtattcggtttgaggatccttcccttcttttttataccttggcttgaacatgtcatatcttaatcatccttagatatcatctcgtatg |
341 |
Q |
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|||||| ||| ||| |||| || |||||| ||||||| || ||| ||| |||||||||||||||| || | | | ||||| |||||| || |||| |||| |
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| T |
5554230 |
actctcctttaggtgttcgattagaggattcttccct-ctctttcatatcttggcttgaacatgttatttgtcattcatcattagatgtcgtctcatatg |
5554328 |
T |
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| Q |
342 |
ttctttctttatggtatgacatttagtttgctc |
374 |
Q |
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||||||||||||| |||| |||| |||||||| |
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| T |
5554329 |
ttctttctttatgttatggtatttggtttgctc |
5554361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 391
Target Start/End: Original strand, 21112728 - 21112828
Alignment:
| Q |
291 |
cttggcttgaacatgtcatatcttaatcatccttagatatcatctcgtatgttctttctttatggtatgacatttagtttgctcatggcaagtcttgttt |
390 |
Q |
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|||| |||||| | ||||| ||| | ||||| ||||||||||||| ||| ||||||||||||| |||| |||| |||||||||| ||||||||||| |
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| T |
21112728 |
cttgacttgaataggtcatttctcattcatcattagatatcatctgatatattctttctttatgttatggtatttggtttgctcataataagtcttgttt |
21112827 |
T |
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| Q |
391 |
t |
391 |
Q |
| |
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| |
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|
| T |
21112828 |
t |
21112828 |
T |
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