View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3350_high_6 (Length: 423)
Name: NF3350_high_6
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 1519278 - 1518914
Alignment:
| Q |
13 |
aatatgcaggcttgagaagtacaaatagagggaaggaggagaatgatttagtcttactgcatgcagttttgaagtatgtccttttctttcnnnnnnnctt |
112 |
Q |
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| T |
1519278 |
aatatgcaggcttgagaagtacaaatagagggaaggaggagaatgatttagtcttactgcatgcagttttgaagtatgtccttttctttctttttttctt |
1519179 |
T |
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| Q |
113 |
gacaaagtgtcttttaatagatatatagataattgcattgcatctatccataatgtcnnnnnnnnnnnnnnnctacgtatgttaccttccattttatgtc |
212 |
Q |
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| T |
1519178 |
gacaaagtgtcttttaatagatatatagataattgcattgcatctatccataatgtctgtgtgtgtgtgtgtctacgtatgttaccttccattttatgtc |
1519079 |
T |
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| Q |
213 |
atttaatgaaaaacgattttgcatgnnnnnnnnnnnnngtaatctttataggttatgtaatcctctaacatacatagttcttttctattaaggcatggat |
312 |
Q |
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| T |
1519078 |
atttaatgaaaaacgattttgcatgtttttgcttttttgtaatctttataggttatgtaatcctctaacatacatagttcttttctattaaggcatggat |
1518979 |
T |
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| Q |
313 |
atggaaagtggccagatatttttgatgataaggatctgaatatgttttctgtatgtcatttggtg |
377 |
Q |
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| T |
1518978 |
atggaaagtggccagatattgttgatgataaggatctgaatatgttttctgtatgtcatttggtg |
1518914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 2911120 - 2910768
Alignment:
| Q |
14 |
atatgcaggcttgagaagtacaaatagagggaaggaggagaatgatttagtcttactgcatgcagttttgaagtatgtccttttctttcnnnnnnncttg |
113 |
Q |
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|||||||||||||||||||||||| | | ||||||||||| ||||||||||||| |||||||||||||||||||||||| ||| | | ||| |
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| T |
2911120 |
atatgcaggcttgagaagtacaaagatatggaaggaggagcatgatttagtcttgctgcatgcagttttgaagtatgtctctttttctttttcttttttg |
2911021 |
T |
|
| Q |
114 |
acaaagtgtcttttaatagatatatagataattgcattgcatctatccataatgtcnnnnnnnnnnnnnnn------ctacgtatgttaccttccatttt |
207 |
Q |
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||| |||||||||||||||||||| | ||||||||||||| | |||| |||||| |||||||||| ||| |||||||| |
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| T |
2911020 |
acatagtgtcttttaatagatata--ggcaattgcattgcatgtttccaaaatgtcgttgtgtatgtgtgtgtgtgtctacgtatgtcaccctccatttt |
2910923 |
T |
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| Q |
208 |
atgtcatttaatgaaaaacgattttgcatgnnnnnnnnnnnnngtaatctttataggtt-----------atgtaatcctctaacatacatagttctttt |
296 |
Q |
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|| ||||| ||||||||||||||||||||| ||||| |||||||||| ||||||||||||| ||||||||||||| |
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| T |
2910922 |
atttcattcaatgaaaaacgattttgcatgtttttgcttttttgtaatttttataggttaattttatttaatgtaatcctcta----acatagttctttt |
2910827 |
T |
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| Q |
297 |
ctattaaggcatggatatggaaagtggccagatatttttgatgataaggatctgaatat |
355 |
Q |
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|||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
2910826 |
ctattaaggcatggatatggaaagtggcatgatattgttgatgataaggatctgaatat |
2910768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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