View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3350_low_1 (Length: 573)

Name: NF3350_low_1
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3350_low_1
NF3350_low_1
[»] chr6 (1 HSPs)
chr6 (1-138)||(279586-279723)
[»] chr8 (2 HSPs)
chr8 (1-140)||(7423525-7423664)
chr8 (1-141)||(25877478-25877618)
[»] chr2 (13 HSPs)
chr2 (14-180)||(37720037-37720203)
chr2 (414-569)||(11593835-11593990)
chr2 (414-569)||(11605751-11605906)
chr2 (414-569)||(11724002-11724157)
chr2 (382-514)||(11613208-11613340)
chr2 (204-315)||(11613403-11613515)
chr2 (180-315)||(11606020-11606156)
chr2 (414-570)||(11687728-11687887)
chr2 (180-315)||(11594104-11594240)
chr2 (204-315)||(11723211-11723323)
chr2 (204-315)||(11688287-11688399)
chr2 (80-145)||(24727855-24727920)
chr2 (1-42)||(24727930-24727971)
[»] chr4 (7 HSPs)
chr4 (1-137)||(42545433-42545569)
chr4 (38-135)||(36514041-36514138)
chr4 (13-140)||(25891864-25891991)
chr4 (13-145)||(54117050-54117182)
chr4 (52-119)||(54713027-54713094)
chr4 (1-53)||(54713243-54713295)
chr4 (83-140)||(43781026-43781083)
[»] chr5 (2 HSPs)
chr5 (8-179)||(31148322-31148493)
chr5 (6-86)||(36219718-36219797)
[»] chr3 (3 HSPs)
chr3 (1-136)||(5353544-5353679)
chr3 (1-145)||(32994959-32995103)
chr3 (69-145)||(44064223-44064299)
[»] chr7 (2 HSPs)
chr7 (1-145)||(9045153-9045297)
chr7 (6-86)||(43469671-43469750)


Alignment Details
Target: chr6 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 279723 - 279586
Alignment:
Q  1 aaaaaagaaaatgttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||    
T  279723 aaaaaagaaaatgttatttaattatgaggtggggtcacaatttttgttttatataacccatcaaaaagttaacaggtaatgaatctgagtcatccaaatt 279624  T
Q  101 ataaagtattaaatctatggtcttggtttaactttccc 138  Q
    | ||||||||||||||||||||||||||||||||||||    
T  279623 aaaaagtattaaatctatggtcttggtttaactttccc 279586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 7423664 - 7423525
Alignment:
Q  1 aaaaaagaaaatgttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| ||| |||| ||||||||||    
T  7423664 aaaaaagaaaatgttatttaattatgaggtggggtcacaatttttgttttatataacccatcaaaaagttaacaggtaatgaatatgagccatccaaatt 7423565  T
Q  101 ataaagtattaaatctatggtcttggtttaactttcccat 140  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  7423564 aaaaagtattaaatctatggtcttggtttaactttcccat 7423525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 25877478 - 25877618
Alignment:
Q  1 aaaaaagaaaatgttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaatt 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |||||||| ||||||||||    
T  25877478 aaaaaagaaaatgttatttaattataaggtggggtcacaatttttgttttatataacccatcaaaaaattaacaggtaatgaatctgagccatccaaatt 25877577  T
Q  101 ataaagtattaaatctatggtcttggtttaactttcccata 141  Q
    | |||||||||||||||||| |||||||||||||| |||||    
T  25877578 aaaaagtattaaatctatggccttggtttaacttttccata 25877618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 2e-57; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 37720203 - 37720037
Alignment:
Q  14 ttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaattataaagtattaaa 113  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||| |||||||    
T  37720203 ttatttaattatgaggtggggtcacaatttttgttttatataacccaacaaaaagttagcaggtaatgaatctgagccatccaaattataaaatattaaa 37720104  T
Q  114 tctatggtcttggtttaactttcccataatggnnnnnnngtttgcttttccaaattaaacagcaccc 180  Q
    ||||||||||||||||||||||||||| ||||       ||||||||| ||||||||||| ||||||    
T  37720103 tctatggtcttggtttaactttcccatgatggaaaaaaagtttgctttcccaaattaaacggcaccc 37720037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 414 - 569
Target Start/End: Complemental strand, 11593990 - 11593835
Alignment:
Q  414 tactaattcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaattacgacatgcttggcaaactacactgttttgcctatcca 513  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||  ||| || ||||| || ||||    
T  11593990 tactaactcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactctattttgtctctcca 11593891  T
Q  514 tttcccttttctcttccaaaatcatttgaatttcagctcgaatagcagcgttaact 569  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  11593890 tttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaact 11593835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 414 - 569
Target Start/End: Complemental strand, 11605906 - 11605751
Alignment:
Q  414 tactaattcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaattacgacatgcttggcaaactacactgttttgcctatcca 513  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||  ||| || ||||| || ||||    
T  11605906 tactaactcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactctattttgtctctcca 11605807  T
Q  514 tttcccttttctcttccaaaatcatttgaatttcagctcgaatagcagcgttaact 569  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  11605806 tttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaact 11605751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 414 - 569
Target Start/End: Original strand, 11724002 - 11724157
Alignment:
Q  414 tactaattcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaattacgacatgcttggcaaactacactgttttgcctatcca 513  Q
    |||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| ||||||||||||  ||| || ||||| || ||||    
T  11724002 tactaactcaccttttctttcagaagttgattttcaaaccgaagttgtttcaaacgtgaatcacggcatgcttggcaagatactctattttgtctctcca 11724101  T
Q  514 tttcccttttctcttccaaaatcatttgaatttcagctcgaatagcagcgttaact 569  Q
    ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  11724102 tttcccttttctcttccaaaagcatttgaatttcagctcgaaaagcagcgttaact 11724157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 382 - 514
Target Start/End: Complemental strand, 11613340 - 11613208
Alignment:
Q  382 cattattatcttagaattaaatagtgaaacattactaattcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaattacgaca 481  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  11613340 cattattatcttagaattaaatagtgaaacattactaactcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaatcacggca 11613241  T
Q  482 tgcttggcaaactacactgttttgcctatccat 514  Q
    ||||||||||| |||| | ||||| || |||||    
T  11613240 tgcttggcaaaatacattcttttgtctttccat 11613208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 11613515 - 11613403
Alignment:
Q  204 aaaactaaagataggttacatctgattatctttagggaagacctaacttcaattc-agtgatagttcctcatttcccatgttgcttagatccaattttta 302  Q
    ||||||||||||||||| |||||| | |||||| |||||||||||||||||| || ||||||||||||||||||||||||| |||| ||||||||||| |    
T  11613515 aaaactaaagataggttccatctgttgatctttggggaagacctaacttcaactccagtgatagttcctcatttcccatgtagcttggatccaattttga 11613416  T
Q  303 cagcttctcatac 315  Q
    |||||||||||||    
T  11613415 cagcttctcatac 11613403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 180 - 315
Target Start/End: Complemental strand, 11606156 - 11606020
Alignment:
Q  180 caagaacaaaccataactcatcataaaactaaagataggttacatctgattatctttagggaagacctaacttcaa-ttcagtgatagttcctcatttcc 278  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||| |||||||||||||||||| | ||||||||||||| | |||||    
T  11606156 caagaacaaaccataactcctcataaatctaaagataggttccatctgatgatctttggggaagacctaacttcaactccagtgatagttccccttttcc 11606057  T
Q  279 catgttgcttagatccaatttttacagcttctcatac 315  Q
    || |  |||| ||| ||| ||| ||||||||||||||    
T  11606056 cacgcagcttggattcaactttgacagcttctcatac 11606020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 414 - 570
Target Start/End: Complemental strand, 11687887 - 11687728
Alignment:
Q  414 tactaattcaccttttctttcagaagttcattttcaagccgaagttgtttcaaacgtgaattacgacatgcttggcaaactacactgttttgcctatc-- 511  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| ||||||||||||| |  | | |  || || ||      
T  11687887 tactaactcaccttttctttcagaagttcattttcaagccgaagttatttcaaatgtgaatcacggcatgcttggcaaaatgtattctcctgtctctcca 11687788  T
Q  512 -catttcccttttctcttccaaaatcatttgaatttcagctcgaatagcagcgttaactg 570  Q
     ||||||| ||||||||||| ||| ||||| ||||||| |||||| ||||||||||||||    
T  11687787 tcatttccattttctcttccgaaagcatttcaatttcacctcgaagagcagcgttaactg 11687728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 180 - 315
Target Start/End: Complemental strand, 11594240 - 11594104
Alignment:
Q  180 caagaacaaaccataactcatcataaaactaaagataggttacatctgattatctttagggaagacctaacttcaa-ttcagtgatagttcctcatttcc 278  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||| |||||||||||||||||| | ||||||||||||| | |||||    
T  11594240 caagaacaaaccataactcctcataaatctaaagataggttccatctgatgatctttggggaagacctaacttcaactccagtgatagttccccttttcc 11594141  T
Q  279 catgttgcttagatccaatttttacagcttctcatac 315  Q
    || |  |||| ||| ||| ||| || |||||||||||    
T  11594140 cacgcagcttggattcaactttgacggcttctcatac 11594104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 204 - 315
Target Start/End: Original strand, 11723211 - 11723323
Alignment:
Q  204 aaaactaaagataggttacatctgattatctttagggaagacctaacttcaattc-agtgatagttcctcatttcccatgttgcttagatccaattttta 302  Q
    ||||||||||||||||| |||||||| |||||  | |||||||| ||||||| || |||||||||||||| ||||||||||  ||| ||||||||||| |    
T  11723211 aaaactaaagataggttccatctgatgatcttcggagaagaccttacttcaactccagtgatagttcctcttttcccatgtaccttggatccaattttga 11723310  T
Q  303 cagcttctcatac 315  Q
    || ||||||||||    
T  11723311 caccttctcatac 11723323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 204 - 315
Target Start/End: Complemental strand, 11688399 - 11688287
Alignment:
Q  204 aaaactaaagataggttacatctgattatctttagggaagacctaacttcaattcag-tgatagttcctcatttcccatgttgcttagatccaattttta 302  Q
    ||||||||||||||||| |||||| | |||||  |||||||||| ||||||| || | |||||||||||| ||||||||||  ||| ||||||||||| |    
T  11688399 aaaactaaagataggttccatctggtgatcttcggggaagaccttacttcaactccggtgatagttcctcttttcccatgtgccttggatccaattttga 11688300  T
Q  303 cagcttctcatac 315  Q
    || ||||||||||    
T  11688299 caccttctcatac 11688287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 80 - 145
Target Start/End: Complemental strand, 24727920 - 24727855
Alignment:
Q  80 taaatctgagtcatccaaattataaagtattaaatctatggtcttggtttaactttcccataatgg 145  Q
    ||||| |||| |||||||||| ||||||||||||||||||| |||||||||||||| |||| ||||    
T  24727920 taaatttgagccatccaaattttaaagtattaaatctatggccttggtttaacttttccatgatgg 24727855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24727971 - 24727930
Alignment:
Q  1 aaaaaagaaaatgttatttaattatgaggtggggtcacaatt 42  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  24727971 aaaaaagaaaatgttatttaattatgaggtggggtcacaatt 24727930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 42545433 - 42545569
Alignment:
Q  1 aaaaaagaaaatgttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  42545433 aaaaaagaaaatgttatttaattatgaggtggggtcacaatttttgttttatataacccatcaaaaagttaacaggtaatgaatctgagccatccaaatt 42545532  T
Q  101 ataaagtattaaatctatggtcttggtttaactttcc 137  Q
    | |||||||||||||||||  ||||||||||||||||    
T  42545533 aaaaagtattaaatctatgaccttggtttaactttcc 42545569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 38 - 135
Target Start/End: Complemental strand, 36514138 - 36514041
Alignment:
Q  38 caatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaattataaagtattaaatctatggtcttggtttaacttt 135  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||  ||| |||||| |||||||||||||||||||  |||||||||||||    
T  36514138 caatttttgttttatataacccaacaaaaagttaacaggtaataaatctgaaccattcaaattttaaagtattaaatctatggctttggtttaacttt 36514041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 140
Target Start/End: Original strand, 25891864 - 25891991
Alignment:
Q  13 gttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaattataaagtattaa 112  Q
    |||||||||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||||| | | |||||||||| |||||||| |||||||||     
T  25891864 gttatttaattacgaggtggggtcacagtttttgttttatataacccatcaaaaagttaacaggtcacacatctgagtcacccaaattaaaaagtattat 25891963  T
Q  113 atctatggtcttggtttaactttcccat 140  Q
    ||| || | | || ||||||||||||||    
T  25891964 atcaattgccatgctttaactttcccat 25891991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 13 - 145
Target Start/End: Original strand, 54117050 - 54117182
Alignment:
Q  13 gttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaattataaagtattaa 112  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||| |||||||||||||||| | | |||| || | ||||||||| |||||||||     
T  54117050 gttatttaattatgaggtggggtcactgtttttgttttatataacccatcaaaaagttaacaggtcacacatctcagccgtccaaattaaaaagtattat 54117149  T
Q  113 atctatggtcttggtttaactttcccataatgg 145  Q
    ||| ||| || || |||||||||||||| ||||    
T  54117150 atcaatgatcatgctttaactttcccatcatgg 54117182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 52 - 119
Target Start/End: Complemental strand, 54713094 - 54713027
Alignment:
Q  52 tataacccaacaaaaagttaacaggtaataaatctgagtcatccaaattataaagtattaaatctatg 119  Q
    ||||| |||||||||||||||||| ||||||||||||  |||||||||||||| ||||||||||||||    
T  54713094 tataatccaacaaaaagttaacagataataaatctgaaccatccaaattataatgtattaaatctatg 54713027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 54713295 - 54713243
Alignment:
Q  1 aaaaaagaaaatgttatttaattatgaggtggggtcacaatttttattttata 53  Q
    |||| |||||||||||||||||||||| ||||||||||||||||| |||||||    
T  54713295 aaaacagaaaatgttatttaattatgatgtggggtcacaatttttgttttata 54713243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 43781026 - 43781083
Alignment:
Q  83 atctgagtcatccaaattataaagtattaaatctatggtcttggtttaactttcccat 140  Q
    |||| |||||||||||||| ||| ||||||||| |||||  ||||| |||||||||||    
T  43781026 atcttagtcatccaaattaaaaactattaaatccatggttgtggttgaactttcccat 43781083  T

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Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 31148322 - 31148493
Alignment:
Q  8 aaaatgttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaattataaagt 107  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| |||||    
T  31148322 aaaatgttatttaattatgaggtggggtcacaatttttgttttatataacccaacaaaaagttaaca-gtagtaaatctgagccatccaaattaaaaagt 31148420  T
Q  108 att-aaatctatggtcttggtttaactttcccataatggnnnnnnngtttgcttttccaaattaaacagcacc 179  Q
    ||| |||||||||||||||||||||||||||||| ||||       || |||||| ||||||||||| |||||    
T  31148421 attaaaatctatggtcttggtttaactttcccatgatgggaaaaaagtgtgctttcccaaattaaacggcacc 31148493  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 36219797 - 36219718
Alignment:
Q  6 agaaaatgttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatct 86  Q
    |||||| |||||||||||||||||||||||||| |||||| ||| |||  |||   ||||||||||| |||||| ||||||    
T  36219797 agaaaaggttatttaattatgaggtggggtcacgatttttgtttgata-gaccagtcaaaaagttaataggtaacaaatct 36219718  T

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Target: chr3 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 136
Target Start/End: Complemental strand, 5353679 - 5353544
Alignment:
Q  1 aaaaaagaaaatgttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaatt 100  Q
    |||| |||| || ||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||  ||||||||||    
T  5353679 aaaacagaagatattatttacttatgaggttgggtcacaatttttgttttatataacccaacaaaaagttagcaggtaataaatctgaaccatccaaatt 5353580  T
Q  101 ataaagtattaaatctatggtcttggtttaactttc 136  Q
    ||||| ||||||||||||| ||||||||||||||||    
T  5353579 ataaaatattaaatctatgatcttggtttaactttc 5353544  T

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Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 32995103 - 32994959
Alignment:
Q  1 aaaaaagaaaatgttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaatt 100  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||| ||||||||||| ||| ||| ||||| |  ||||||||||    
T  32995103 aaaaaagaaaatgttatttaaatatgaggtggagtcacaatttttgttttatataacccatcaaaaagttaataggcaatgaatctaaaccatccaaatt 32995004  T
Q  101 ataaagtattaaatctatggtcttggtttaactttcccataatgg 145  Q
    | ||| |||||||||||||  ||||||||||||||||||| ||||    
T  32995003 aaaaaatattaaatctatgaccttggtttaactttcccatgatgg 32994959  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 44064299 - 44064223
Alignment:
Q  69 ttaacaggtaataaatctgagtcatccaaattataaagtattaaatctatggtcttggtttaactttcccataatgg 145  Q
    |||| |||| |||||||| || ||| ||||| | |||||||||||||||||||  ||||| ||||||||||| ||||    
T  44064299 ttaataggtcataaatcttagccattcaaataaaaaagtattaaatctatggttgtggttcaactttcccatgatgg 44064223  T

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Target: chr7 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 9045153 - 9045297
Alignment:
Q  1 aaaaaagaaaatgttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatctgagtcatccaaatt 100  Q
    ||||||||||| ||||||||||||||||||||||||| | ||||| |||||||||| ||| | ||||||||| || ||| | |||| |||| || |||      
T  9045153 aaaaaagaaaaggttatttaattatgaggtggggtcatagtttttgttttatataagccatccaaaagttaatagataacacatctcagtcgtcgaaaca 9045252  T
Q  101 ataaagtattaaatctatggtcttggtttaactttcccataatgg 145  Q
    |  ||||| || |||||||||| || ||||||||| |||| ||||    
T  9045253 aacaagtaatatatctatggtcctgctttaacttttccatcatgg 9045297  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 43469750 - 43469671
Alignment:
Q  6 agaaaatgttatttaattatgaggtggggtcacaatttttattttatataacccaacaaaaagttaacaggtaataaatct 86  Q
    |||||||||||||||||||||||||||| ||||| ||||| ||| |||  |||   |||||||||||||||||| ||||||    
T  43469750 agaaaatgttatttaattatgaggtgggatcacactttttgtttgata-gaccagtcaaaaagttaacaggtaacaaatct 43469671  T

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