View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3350_low_11 (Length: 383)
Name: NF3350_low_11
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 77 - 370
Target Start/End: Complemental strand, 4033678 - 4033385
Alignment:
| Q |
77 |
caattcattttcccttatctagaatctgaagttgatcatgccagaagaaaaaactaacatatataaaaaagaaactaaggtatattctatctatggagtc |
176 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4033678 |
caattcattttcccttatctagaatctgaagttgttcatgccagaagaaaaaactaacatatataaaaaagaaactaaggtatattctatctatggagtc |
4033579 |
T |
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| Q |
177 |
tacttcaatcaactaacaaagaaggagacaaagtcattcaaatacggacaaattttagctttatgtcctttattagtttatttagttttctatgatatca |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4033578 |
tacttcaatcaactaacaaagaaggagacaaagtcattcaaatacggacaaatttgagctttatgtcctttattagtttatttagttttctatgatatca |
4033479 |
T |
|
| Q |
277 |
ccccattgatattaactaatttaacaccacttcctacataagcaatctattttgtcaatgtttgatcataagtcttaatcacaaaaaggtgtct |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4033478 |
ccccattgatattaactaatttaacaccacttcctacataagcaatctattttgtcaatgtttgatcataagtcttaatcacaaaaaggtgtct |
4033385 |
T |
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