View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3350_low_13 (Length: 350)
Name: NF3350_low_13
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_low_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 11 - 350
Target Start/End: Original strand, 28267440 - 28267780
Alignment:
| Q |
11 |
aatgagagttatctaaacataagtataccaagacactttaatctttagtgtactttcctgtttcnnnnnnnn-cctttgaaatattaaatggacatagat |
109 |
Q |
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| T |
28267440 |
aatgagagttatctaaacataagtataccaagacactttaatctttagtgtactttcctgtttctttttttttcctttgaaatattaaatggacatagat |
28267539 |
T |
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| Q |
110 |
ttcaaagtaatcataaattatgatgtttatgcacgtattcctcaatccaaagagacacaataaacatttatttttcctgtcagactgacacacacactga |
209 |
Q |
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| T |
28267540 |
ttcaaagcaatcataaattatgatgtttatgcatgtattcctcaatccaaagagacacaataaacatttatttttcctgtcagactgacacacacactga |
28267639 |
T |
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| Q |
210 |
ctgatttgttgacactatgaggtggctaaagttcatttttcaatgaatagaaatttgatgcagtgtcgcgatatggtatagaaagcggtggtttgagttt |
309 |
Q |
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| T |
28267640 |
ctgatttgttgacactatgaggtggctaaagttcatttttcaatgaatagaaatttgatgcagtgtcgcgatatggtatagaaagcggtggtttgagttt |
28267739 |
T |
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| Q |
310 |
tttcagtgacatagcacttctactaattgatgatgtccatc |
350 |
Q |
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| T |
28267740 |
tttcagtgacatagcacttctactaattgatgaagtccatc |
28267780 |
T |
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