View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3350_low_14 (Length: 349)

Name: NF3350_low_14
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3350_low_14
NF3350_low_14
[»] chr5 (3 HSPs)
chr5 (279-342)||(11575049-11575112)
chr5 (283-345)||(22095610-22095672)
chr5 (283-345)||(5415505-5415567)
[»] chr2 (3 HSPs)
chr2 (279-342)||(15017397-15017460)
chr2 (279-343)||(5325479-5325543)
chr2 (283-324)||(10978363-10978404)
[»] chr4 (10 HSPs)
chr4 (1-58)||(51722411-51722468)
chr4 (279-342)||(30310167-30310230)
chr4 (279-342)||(19114157-19114220)
chr4 (189-259)||(51722161-51722231)
chr4 (283-324)||(8934841-8934882)
chr4 (283-323)||(33988128-33988168)
chr4 (283-345)||(7473125-7473187)
chr4 (283-345)||(19644709-19644771)
chr4 (84-133)||(51722323-51722372)
chr4 (283-323)||(29554100-29554140)
[»] chr7 (7 HSPs)
chr7 (283-349)||(6970719-6970785)
chr7 (295-342)||(21439281-21439328)
chr7 (283-345)||(17804664-17804726)
chr7 (283-345)||(25923789-25923851)
chr7 (283-345)||(34518964-34519026)
chr7 (283-345)||(45987768-45987830)
chr7 (283-323)||(33796727-33796767)
[»] chr6 (5 HSPs)
chr6 (283-349)||(5086383-5086449)
chr6 (283-349)||(33019695-33019761)
chr6 (284-323)||(503892-503931)
chr6 (283-345)||(8263964-8264026)
chr6 (283-345)||(33639636-33639698)
[»] chr3 (2 HSPs)
chr3 (279-341)||(20894110-20894172)
chr3 (283-345)||(51144783-51144845)
[»] chr8 (1 HSPs)
chr8 (283-345)||(36318850-36318912)
[»] scaffold0108 (1 HSPs)
scaffold0108 (283-345)||(10627-10689)
[»] chr1 (2 HSPs)
chr1 (283-324)||(24314759-24314800)
chr1 (283-323)||(43810550-43810590)


Alignment Details
Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 279 - 342
Target Start/End: Original strand, 11575049 - 11575112
Alignment:
Q  279 actaatttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataat 342  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  11575049 actaatttggctactctgtgtctgggtcttatggactgaacgtaacaataggtgttttaataat 11575112  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 22095610 - 22095672
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattct 345  Q
    ||||||||||| ||||| ||||| |||||||||||||||||| |||| ||||| |||||||||    
T  22095610 atttggcttctttgtgtttgggttttatggactgaacgtaacaataggtgtttcaataattct 22095672  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 5415505 - 5415567
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattct 345  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||  ||||| ||| |||||    
T  5415505 atttggcttctttgtgcctgggtcttatggactgaacgtaacaatatgtgtttcaatgattct 5415567  T

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Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 15017460 - 15017397
Alignment:
Q  279 actaatttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataat 342  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  15017460 actaatttggctactctgtgtctgggtcttatggactgaacgtaacaataggtgttttaataat 15017397  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 279 - 343
Target Start/End: Complemental strand, 5325543 - 5325479
Alignment:
Q  279 actaatttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataatt 343  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||| |||| |||||||||||||    
T  5325543 actaatttggctactctgtgtctggatcttatggattgaacgtaacaataggtgttttaataatt 5325479  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 283 - 324
Target Start/End: Original strand, 10978363 - 10978404
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaac 324  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  10978363 atttggcttctctgtgtctgggtcttatggactggacgtaac 10978404  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 51722468 - 51722411
Alignment:
Q  1 ctcctgctttcttgaacttctcatatgaatccctaaaagagcagacctgcaataataa 58  Q
    |||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||    
T  51722468 ctcctgctttcttgaacttctcatatgaatccctaaaagcacaggcctgcaataataa 51722411  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 30310230 - 30310167
Alignment:
Q  279 actaatttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataat 342  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||| |||| ||||||||||||    
T  30310230 actaatttggctactctgtgtctctgtcttatggactgaacgtaacaataggtgttttaataat 30310167  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 342
Target Start/End: Complemental strand, 19114220 - 19114157
Alignment:
Q  279 actaatttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataat 342  Q
    |||||||| ||| || ||||||||||||||||||||||||| |||| |||| ||||||||||||    
T  19114220 actaattttgctactttgtgtctgggtcttatggactgaacataacaataggtgttttaataat 19114157  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 259
Target Start/End: Complemental strand, 51722231 - 51722161
Alignment:
Q  189 aatattggttaaaacatgagaactcttctaatgcggattgaaactaaaaagataaagcaattctaaaacgc 259  Q
    |||||||| |||||  ||||||||||||| ||| ||||||||||  ||||||||||||| |||||||||||    
T  51722231 aatattggataaaatttgagaactcttctgatgtggattgaaacagaaaagataaagcagttctaaaacgc 51722161  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 8934882 - 8934841
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaac 324  Q
    ||||||||||| |||| |||||||||||||||||||||||||    
T  8934882 atttggcttctttgtgcctgggtcttatggactgaacgtaac 8934841  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 33988128 - 33988168
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaa 323  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  33988128 atttggcttctttgtgtctgggttttatggactgaacgtaa 33988168  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 7473187 - 7473125
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattct 345  Q
    ||||| ||||| ||||||||||||||||||| |||||||||| |||  ||||| ||| |||||    
T  7473187 atttgacttctttgtgtctgggtcttatggaatgaacgtaacaatatgtgtttcaatgattct 7473125  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 19644771 - 19644709
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattct 345  Q
    ||||||||||| |||| |||||| |||||||||||||||||| |||  ||||| ||| |||||    
T  19644771 atttggcttctttgtgcctgggttttatggactgaacgtaacaatatgtgtttcaatgattct 19644709  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 51722372 - 51722323
Alignment:
Q  84 atggaaatgatttattgtatttgctctactgtgcataatctaatttcatg 133  Q
    ||||||||  |||||||||||||||||||| |||||||||| ||| ||||    
T  51722372 atggaaatagtttattgtatttgctctactctgcataatctgattccatg 51722323  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 29554100 - 29554140
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaa 323  Q
    ||||||||||| |||| |||||| |||||||||||||||||    
T  29554100 atttggcttctttgtgcctgggtattatggactgaacgtaa 29554140  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 349
Target Start/End: Complemental strand, 6970785 - 6970719
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgtta 349  Q
    |||||||| || ||||||||||||||||||||| |||||||| |||  |||||||||||||||||||    
T  6970785 atttggctactttgtgtctgggtcttatggactcaacgtaacaataagtgttttaataattctgtta 6970719  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 295 - 342
Target Start/End: Original strand, 21439281 - 21439328
Alignment:
Q  295 tgtgtctgggtcttatggactgaacgtaactatagatgttttaataat 342  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||    
T  21439281 tgtgtctgggtcttatggactgaacgtaacaataggtgttttaataat 21439328  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 17804726 - 17804664
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattct 345  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||  ||||| ||| |||||    
T  17804726 atttggcttctctgtgcctgggtcttatggactgaacgtaacaatatgtgtttcaatgattct 17804664  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 25923851 - 25923789
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattct 345  Q
    ||||||||||| |||| ||||||||||||||||||||||||| |||  ||||| ||| |||||    
T  25923851 atttggcttctttgtgcctgggtcttatggactgaacgtaacaatatgtgtttcaatgattct 25923789  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 34518964 - 34519026
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattct 345  Q
    ||||||||||| |||| |||||| |||||||||||||||||| |||  ||||| ||| |||||    
T  34518964 atttggcttctttgtgcctgggttttatggactgaacgtaacaatatgtgtttcaatgattct 34519026  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 45987830 - 45987768
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattct 345  Q
    ||||||||||| |||| |||||| |||||||||||||||||| |||  ||||| ||| |||||    
T  45987830 atttggcttctttgtgcctgggttttatggactgaacgtaacaatatgtgtttcaatgattct 45987768  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 323
Target Start/End: Original strand, 33796727 - 33796767
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaa 323  Q
    ||||||||||| ||||||||||| |||| ||||||||||||    
T  33796727 atttggcttctttgtgtctgggttttatagactgaacgtaa 33796767  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 349
Target Start/End: Original strand, 5086383 - 5086449
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgtta 349  Q
    |||||||| |||||||||||||| |||||||||||||||||| |||  ||||||||||||| |||||    
T  5086383 atttggctactctgtgtctgggttttatggactgaacgtaacaataagtgttttaataattatgtta 5086449  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 283 - 349
Target Start/End: Complemental strand, 33019761 - 33019695
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattctgtta 349  Q
    ||||| || |||||||||| |||||||||||||||||||||| |||| ||||||||||||| |||||    
T  33019761 atttgcctactctgtgtctaggtcttatggactgaacgtaacaataggtgttttaataattatgtta 33019695  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 284 - 323
Target Start/End: Original strand, 503892 - 503931
Alignment:
Q  284 tttggcttctctgtgtctgggtcttatggactgaacgtaa 323  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  503892 tttggcttctctgtgcctgggtcttatggactgaacgtaa 503931  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 8264026 - 8263964
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattct 345  Q
    ||||||||||||| || |||| |||||||||||||||||||| |||  ||||| ||| |||||    
T  8264026 atttggcttctctatgcctggatcttatggactgaacgtaacaatatgtgtttcaatgattct 8263964  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 33639698 - 33639636
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattct 345  Q
    ||||||||||| |||| |||||| |||||||||||||||||| |||  ||||| ||| |||||    
T  33639698 atttggcttctttgtgcctgggtattatggactgaacgtaacaatatgtgtttcaatgattct 33639636  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 20894110 - 20894172
Alignment:
Q  279 actaatttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataa 341  Q
    |||||||||||| || ||||| |||||||||||||||||||||||| |||  |||||||||||    
T  20894110 actaatttggctactttgtgtttgggtcttatggactgaacgtaacaataagtgttttaataa 20894172  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 51144845 - 51144783
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattct 345  Q
    |||||||| || ||||| || || |||||||||||||||||| |||| ||||| |||||||||    
T  51144845 atttggctactttgtgtttgagttttatggactgaacgtaacaataggtgtttcaataattct 51144783  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 283 - 345
Target Start/End: Original strand, 36318850 - 36318912
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattct 345  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||  ||||| ||| |||||    
T  36318850 atttgacttctctgtgtctgcgtcttatggactgaacgtaacaatatgtgtttcaatgattct 36318912  T

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Target: scaffold0108 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 345
Target Start/End: Complemental strand, 10689 - 10627
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaactatagatgttttaataattct 345  Q
    ||||||||||| |||| |||||| |||||||||||||||||| |||  ||||| ||| |||||    
T  10689 atttggcttctttgtgcctgggttttatggactgaacgtaacaatatgtgtttcaatgattct 10627  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 324
Target Start/End: Complemental strand, 24314800 - 24314759
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaac 324  Q
    ||||||||||| |||| ||| |||||||||||||||||||||    
T  24314800 atttggcttctttgtgcctgagtcttatggactgaacgtaac 24314759  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 323
Target Start/End: Complemental strand, 43810590 - 43810550
Alignment:
Q  283 atttggcttctctgtgtctgggtcttatggactgaacgtaa 323  Q
    ||||||||||| |||| |||||| |||||||||||||||||    
T  43810590 atttggcttctttgtgcctgggtgttatggactgaacgtaa 43810550  T

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