View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3350_low_18 (Length: 298)
Name: NF3350_low_18
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 49554173 - 49553890
Alignment:
| Q |
1 |
ctccgtgctatttgcaagattcattttttcctgatacaacttcaacaaatgaggagaatcctccttaaaacatttcacaaatttgtccagaaacaacttc |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49554173 |
ctccatgctatttgcaagattcattttttcctgatacaacttcaacaaatgaggagaatcctccttaaaacatttcacaaatttgtccagaaacaacttc |
49554074 |
T |
|
| Q |
101 |
tctgtcacagcaaacggtgcacttagtgaggcgtcctttcttctcaaacctttagatacaaggaactgcaaaactgcagcccttggaataacccgcttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49554073 |
tctgtcacagcaaacggtgcacttagtgaggcgtcccttcttctcaaacctttagatacaaggaactgcaaaactgcagcccttggaataacccgcttct |
49553974 |
T |
|
| Q |
201 |
cgagtctcaatagaaagattcctggagcattaacaagatccaaagaattcaaacctaacttatcaacccaagcgctcaaaactg |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49553973 |
cgagtctcaatagaaagattcctggagcattaacaagatccaaagaattcaaacctaactgatcaacccaagcgctcaaaactg |
49553890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8557529 - 8557750
Alignment:
| Q |
1 |
ctccgtgctatttgcaagattcattttttcctgatacaacttcaacaaatgaggagaatcctccttaaaacatttcacaaatttgtccagaaacaacttc |
100 |
Q |
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|||| |||||||||||||||| |||||||||||||| | |||||||||||||| ||| ||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
8557529 |
ctccatgctatttgcaagattaattttttcctgatatagcttcaacaaatgagtagagtcctccttaaaccatttcacaaacttgtccagaaacaacttt |
8557628 |
T |
|
| Q |
101 |
tctgtcacagcaaacggtgcacttagtgaggcgtcctttcttctcaaacctttagatacaaggaactgcaaaactgcagcccttggaataacccgcttct |
200 |
Q |
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|||| || |||||| |||| |||||||| || |||||||||||||||||||| |||| | |||||| ||||||||||||||||||||| |||||||||| |
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| T |
8557629 |
tctgacatagcaaatggtgtacttagtgccgcatcctttcttctcaaaccttttgatagagggaacttcaaaactgcagcccttggaatcacccgcttct |
8557728 |
T |
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| Q |
201 |
cgagtctcaatagaaagattcc |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
8557729 |
cgagtctcaatagaaagattcc |
8557750 |
T |
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