View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3350_low_19 (Length: 270)
Name: NF3350_low_19
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 43746165 - 43746427
Alignment:
| Q |
1 |
ggagaaaacgaaaacgaaaacaaagacaacacaagccagcaccgaaacactgaagggaaaaacttacaaccttgttaaccatcgtctaattcagaatcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43746165 |
ggagaaaacgaaaacgaaaacaaagacaacacaagccagcaccgaaacactgaagggaaaaacttacaaccttgttaaccatcgtctaattcagaatcat |
43746264 |
T |
|
| Q |
101 |
gagatttatacatgaaaacctaatacatacataaaataaagattaaaaaagaaatgtggttattacttatagttacaataa-------------ggttgt |
187 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
43746265 |
gagatttatacatgaaaaccta----atacataaaataaagattaaaaaagaaatgtggttattacttatagttacaataaatgatgatgacagtgttgt |
43746360 |
T |
|
| Q |
188 |
ttcttgtagccaggggtgaaaaataaatgtaacagaaaggataaagtgaaagaagaagatttctttg |
254 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43746361 |
ttcttgtagcaaggggtgaaaaataaatgtaacagaaaggataaagtgaaagaagaagatttctttg |
43746427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 166
Target Start/End: Complemental strand, 39118813 - 39118780
Alignment:
| Q |
133 |
aaaataaagattaaaaaagaaatgtggttattac |
166 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |
|
|
| T |
39118813 |
aaaataaagattaaaaaagaaatgtggttcttac |
39118780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University