View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3350_low_24 (Length: 241)
Name: NF3350_low_24
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 34268050 - 34267863
Alignment:
| Q |
12 |
tttaccaatgcattaagagttgatctattcaaagtattaaggataatactaagcattatacacttactttcttacttaaaagtttgattcttaccactaa |
111 |
Q |
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| T |
34268050 |
tttaccaatgcattaagagttgatccattcaaagtattaaggataatgctaagcattatacacttgctttcttacttaaaagtttgattcttaccactaa |
34267951 |
T |
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| Q |
112 |
caataacaaattctagcaagatttgagttcagttcccacattcaacaaataccaacaaattaacaaataacgtactaacattaaccgtt |
200 |
Q |
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| T |
34267950 |
caataacaaatactagcaagatttgagttcagttcccacattcaacaaataccaacaaattaataaataacgtact-acattaaccgtt |
34267863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 238
Target Start/End: Complemental strand, 34267847 - 34267819
Alignment:
| Q |
210 |
ctatggttgtttctttattgaacgttcat |
238 |
Q |
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| T |
34267847 |
ctatggttgtttctttattgaacgttcat |
34267819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 115 - 196
Target Start/End: Original strand, 50951492 - 50951574
Alignment:
| Q |
115 |
taacaaattctagcaagatttgagttcagttcccacattcaacaaat-accaacaaattaacaaataacgtactaacattaac |
196 |
Q |
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| T |
50951492 |
taacaaatacgatcaagatttgagttcaattcccacattcaacaaataaccaaaaaaataacaaataacctaccaacattaac |
50951574 |
T |
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