View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3350_low_3 (Length: 501)
Name: NF3350_low_3
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 8 - 486
Target Start/End: Complemental strand, 52721639 - 52721161
Alignment:
| Q |
8 |
ccaagaatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctaccgaaactccttttcgatgtttcttgacggaggctacaataacct |
107 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52721639 |
ccaataatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataacct |
52721540 |
T |
|
| Q |
108 |
gaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtggg |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52721539 |
gaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtggg |
52721440 |
T |
|
| Q |
208 |
tattccaacaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccaagttgatagcaaagaaaaaccaatta |
307 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52721439 |
tattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccatgttgatagcaaagaaaaaccaatta |
52721340 |
T |
|
| Q |
308 |
aagaaagcgtatttctgttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggcttgattcctcctgtacccaaag |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52721339 |
aagaaagcgtatttctgttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggcttgattcctcctgtacccaaag |
52721240 |
T |
|
| Q |
408 |
caataaggccaagtgcaccgtacaagaaggagatttggccttgacttgcctccttgcatggtttcgccagacatttctg |
486 |
Q |
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| T |
52721239 |
caataaggccaagtgcaccgtacaagaaggagatttggccttgacttgcctccttgcatggtttcgccagacatttctg |
52721161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 8 - 483
Target Start/End: Complemental strand, 52712818 - 52712343
Alignment:
| Q |
8 |
ccaagaatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctaccgaaactccttttcgatgtttcttgacggaggctacaataacct |
107 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |||||| || |||||||||||||||||||||||||||||| |
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| T |
52712818 |
ccaataatatcagagtgtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacct |
52712719 |
T |
|
| Q |
108 |
gaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtggg |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||| |
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| T |
52712718 |
gaagaaacctagtaaaagggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtggg |
52712619 |
T |
|
| Q |
208 |
tattccaacaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccaagttgatagcaaagaaaaaccaatta |
307 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
52712618 |
aattccaaaaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagcacccatgttgatagcaaagaaaaaccaatta |
52712519 |
T |
|
| Q |
308 |
aagaaagcgtatttctgttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggcttgattcctcctgtacccaaag |
407 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || | |
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| T |
52712518 |
aagaaagcgtatttcttttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggtttgattcctccggtacctaagg |
52712419 |
T |
|
| Q |
408 |
caataaggccaagtgcaccgtacaagaaggagatttggccttgacttgcctccttgcatggtttcgccagacattt |
483 |
Q |
| |
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|||| || |||||||||||||||||||| |||||||| |||||||||| |||| ||| ||||| || |||||||| |
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|
| T |
52712418 |
caatgagaccaagtgcaccgtacaagaatgagatttgagcttgacttgcttcctggcacggttttgctagacattt |
52712343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 465
Target Start/End: Complemental strand, 52698999 - 52698542
Alignment:
| Q |
8 |
ccaagaatatcagagtgtgtggtctcaacctcatagagagtaggttcattttctaccgaaactccttttcgatgtttcttgacggaggctacaataacct |
107 |
Q |
| |
|
|||| ||||||||||| |||||| |||||||||||||||| || |||||||||||| || |||||| |||||||||||| | || ||||||||||||| |
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|
| T |
52698999 |
ccaataatatcagagtatgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacct |
52698900 |
T |
|
| Q |
108 |
gaagaaacctagtaaaagggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtggg |
207 |
Q |
| |
|
||||||||||||| || |||||||||||||| ||||||||||| |||||| ||| |||| | || | | ||||||||||| || | ||||||||||||| |
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|
| T |
52698899 |
gaagaaacctagtgaatgggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtggg |
52698800 |
T |
|
| Q |
208 |
tattccaacaccccaaccccaccctagtttatcttgtgcataaaccaatatcgtgattccaagaagagaacccaagttgatagcaaagaaaaaccaatta |
307 |
Q |
| |
|
|| | ||| |||||||| |||||||| || | |||| ||||||||||| || ||||||||||| | ||||| |||||| |||||| ||||||||||| |
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|
| T |
52698799 |
taatgcaaaaccccaactccaccctacttggttttgtaaataaaccaatagtgtaattccaagaagggcacccatgttgatggcaaagtaaaaccaatta |
52698700 |
T |
|
| Q |
308 |
aagaaagcgtatttctgttggacttctttttcatctccctcgtcaaattggtctgctccaaaggatgatacacaaggcttgattcctcctgtacccaaag |
407 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||||||||||||||||| || |||||||| || || |||||||| ||||||||||| |||||||| | |
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|
| T |
52698699 |
aagaaagagaatttcatttggacttctttttcatctccctcgtcaaattgatcagctccaaatgaggaaacacaaggtttgattcctccagtacccaagg |
52698600 |
T |
|
| Q |
408 |
caataaggccaagtgcaccgtacaagaaggagatttggccttgacttgcctccttgca |
465 |
Q |
| |
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|||| ||||||||||||| |||||||| || |||||||||| ||||| || ||||| |
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|
| T |
52698599 |
caatgaggccaagtgcactatacaagaataagttttggccttggcttgcttctttgca |
52698542 |
T |
|
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