View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3350_low_32 (Length: 214)
Name: NF3350_low_32
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 39451140 - 39451331
Alignment:
| Q |
10 |
acatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgctctcctcgaagctcagaaaccaaatgtcaaaca |
109 |
Q |
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| T |
39451140 |
acatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgctctcctcgaagctcagaaaccaaatgtcaaaca |
39451239 |
T |
|
| Q |
110 |
agccgtttctaacctcactactggaggaggagaaaatggagtccttgccaccatcgttgttgacatgttctgcaccaccatgattgatattg |
201 |
Q |
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| T |
39451240 |
agccgtttctaacctcactactggaggaggagaaaatggagtcctcgccaccatcgttgttgacatgttctgcaccaccatgattgatattg |
39451331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 193
Target Start/End: Original strand, 39475646 - 39475829
Alignment:
| Q |
10 |
acatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgctctcctcgaagctcagaaaccaaatgtcaaaca |
109 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||| | |||||||||||||||||||||||||| || ||||| |
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| T |
39475646 |
acatcatcaaccttccagaagtttctcttcccccaaacaccgatccaggtttctcttccatgacagctctcctcgaagctcagaaaccaaacgtaaaaca |
39475745 |
T |
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| Q |
110 |
agccgtttctaacctcactactggaggaggagaaaatggagtccttgccaccatcgttgttgacatgttctgcaccaccatgat |
193 |
Q |
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||| || || |||||||||||| ||| |||| || ||||| ||| ||| || ||||||||||||||||||||||||||||||| |
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| T |
39475746 |
agctgtctccaacctcactactagagaaggacaacatggacacctcgccgccttcgttgttgacatgttctgcaccaccatgat |
39475829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 39486608 - 39486796
Alignment:
| Q |
13 |
tcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagc |
112 |
Q |
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||||||||||||||||| ||||||||| ||||||||| | ||| |||| | |||| |||||||| ||||||||||||||||| ||||||||||| |
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| T |
39486608 |
tcatcaaccttccagaatgttctcttcccccaaacaccgaaccacgttttgt---catgaacgctctccttgaagctcagaaaccaaacgtcaaacaagc |
39486704 |
T |
|
| Q |
113 |
cgtttctaacctcactactggaggaggagaaaa---tggagtccttgccaccatcgttgttgacatgttctgcaccaccatgattgatattg |
201 |
Q |
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|| || |||||||||||| ||| |||| || |||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
39486705 |
tgtatccaacctcactactagagaaggacaaccacctggacaccttgccgccttcgttgttgacatgttctgcaccaccatgattgatattg |
39486796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 197
Target Start/End: Original strand, 39454780 - 39454960
Alignment:
| Q |
11 |
catcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgctctcctcgaagctcagaaaccaaatgtcaaacaa |
110 |
Q |
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||||||||||||||||||| |||||||| |||||||| ||||||| || | |||||| | |||| ||| ||||||||||||||||| ||||||||| |
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| T |
39454780 |
catcatcaaccttccagaatgctctcttcccccaaacactaatccagtttcc---tccatgtccgctcaccttgaagctcagaaaccaaacgtcaaacaa |
39454876 |
T |
|
| Q |
111 |
gccgtttctaacctcactactggaggaggagaaaatggagtccttgccaccatcgttgttgacatgttctgcaccaccatgattgat |
197 |
Q |
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||||| |||||||||| |||| || | || || ||||||||| || | ||||||||||||||| |||||| ||||||||||| |
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| T |
39454877 |
gccgtatctaacctcattact---ggtgaagcaagtggagtcctcgcagctttcgttgttgacatgtcctgcacagccatgattgat |
39454960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 39472176 - 39472357
Alignment:
| Q |
10 |
acatcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgctctcctcgaagctcagaaaccaaatgtcaaaca |
109 |
Q |
| |
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|||||||||||||||||||| ||||||| | |||||||| ||| |||| | || ||| |||| ||||||||||||||||||||||| |||||||| |
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| T |
39472176 |
acatcatcaaccttccagaatgttctcttgccccaaacacagatcaaggtccctct---atgactgcgctcctcgaagctcagaaaccaaacgtcaaaca |
39472272 |
T |
|
| Q |
110 |
agccgtttctaacctcactactggaggaggagaaaatggagtccttgccaccatcgttgttgacatgttctgcaccaccatgattgat |
197 |
Q |
| |
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|| || |||||||||| ||| || ||||||||||||||||||| | | |||||||||||||||||||| | |||||||||| |
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| T |
39472273 |
agtagtatctaacctcattac---cagatcagaaaatggagtccttgccgcttttgttgttgacatgttctgcacaaacatgattgat |
39472357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 75 - 197
Target Start/End: Original strand, 39483462 - 39483584
Alignment:
| Q |
75 |
gctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtccttgccaccatcgttgttgaca |
174 |
Q |
| |
|
|||||||| ||||||||||||||||| | | |||||| || || |||||||||||| ||| |||| || ||||| ||| || || |||||||||||| |
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| T |
39483462 |
gctctccttgaagctcagaaaccaaacataatacaagctgtctccaacctcactactagagaaggacaacatggacacctctccgccttcgttgttgaca |
39483561 |
T |
|
| Q |
175 |
tgttctgcaccaccatgattgat |
197 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
39483562 |
tgttctgcaccaccatgattgat |
39483584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 77 - 197
Target Start/End: Complemental strand, 39458259 - 39458142
Alignment:
| Q |
77 |
tctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggaggaggagaaaatggagtccttgccaccatcgttgttgacatg |
176 |
Q |
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||||||| |||||||||||||||| |||||| ||||||| || |||||||||| || | ||||||||||||||| || | || ||||||||||| |
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| T |
39458259 |
tctcctcaaagctcagaaaccaaacgtcaaaaaagccgtctccaacctcactaa---agcaccagaaaatggagtcctagctgcattcattgttgacatg |
39458163 |
T |
|
| Q |
177 |
ttctgcaccaccatgattgat |
197 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
39458162 |
ttctgcaccaccatgattgat |
39458142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 39464560 - 39464451
Alignment:
| Q |
13 |
tcatcaaccttccagaagtttctcttcctccaaacaccaatccaggtttcgcttccatgcctgctctcctcgaagctcagaaaccaaatgtcaaacaagc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||| | || | | ||||||||| |||| ||| |||||||| || ||||| |||||||| ||||||||||| |
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| T |
39464560 |
tcatcaaccttccagaagtttctcttccccaaacctctgatccaggttccgct---atgaacgctctccttgatgctcacaaaccaaacgtcaaacaagc |
39464464 |
T |
|
| Q |
113 |
cgtttctaacctc |
125 |
Q |
| |
|
||| ||||||||| |
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| T |
39464463 |
cgtctctaacctc |
39464451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 39460456 - 39460508
Alignment:
| Q |
79 |
tcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactact |
131 |
Q |
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||||||||||||||||| |||| |||||||||||||| ||||| ||||||||| |
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| T |
39460456 |
tcctcgaagctcagaaatcaaacgtcaaacaagccgtatctaatctcactact |
39460508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 48
Target Start/End: Original strand, 39460389 - 39460428
Alignment:
| Q |
9 |
gacatcatcaaccttccagaagtttctcttcctccaaaca |
48 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||| |
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| T |
39460389 |
gacatcatcaaccttccagaagtttctcttcccccaaaca |
39460428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 43312416 - 43312382
Alignment:
| Q |
163 |
tcgttgttgacatgttctgcaccaccatgattgat |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
43312416 |
tcgttgttgacatgttctgcaccaccatgattgat |
43312382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 39464443 - 39464403
Alignment:
| Q |
157 |
ccaccatcgttgttgacatgttctgcaccaccatgattgat |
197 |
Q |
| |
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||||| |||||||||||||||||||||||| |||||||||| |
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| T |
39464443 |
ccaccttcgttgttgacatgttctgcaccaacatgattgat |
39464403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 135
Target Start/End: Complemental strand, 39470724 - 39470664
Alignment:
| Q |
75 |
gctctcctcgaagctcagaaaccaaatgtcaaacaagccgtttctaacctcactactggag |
135 |
Q |
| |
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||||||||||||||||| ||| |||| ||||||||||| | || |||||||||||||||| |
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| T |
39470724 |
gctctcctcgaagctcataaagcaaacgtcaaacaagctatctccaacctcactactggag |
39470664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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