View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3350_low_5 (Length: 490)
Name: NF3350_low_5
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 28266258 - 28266019
Alignment:
| Q |
10 |
aagaaaatgaatccattatcggaatgcggagttaactgcacaataacgagttgaaaatagaacatcatttttaaagtacaagatcaataaaattaaagaa |
109 |
Q |
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| T |
28266258 |
aagaatatgaatccattatgggaatgcggagttaactgcacaataacgagttgaaaatagaacatcatttttaaagtacaagatcaataaaattaaagaa |
28266159 |
T |
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| Q |
110 |
aacgcaatcaagcaaataaaatataacattgcatataatcaccaatcaccttacatcacaagtgaattccaattttccatacattacaatagagatacag |
209 |
Q |
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| T |
28266158 |
aacacaatcaagcaaataaaatataacattgcatataatcaccaatc-----acatcgcaagtgaattccaattttccatacattacaatagagatacag |
28266064 |
T |
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| Q |
210 |
agtaacacaacaaaatttcaaatttaagcatgataataatcttga |
254 |
Q |
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| T |
28266063 |
agtaacacaacaaaatttcaaatttaagcatgataataatcttga |
28266019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 384 - 467
Target Start/End: Complemental strand, 28265912 - 28265829
Alignment:
| Q |
384 |
ctgaaccgattattccatcaaatatctcaggaaatgacgagtaagctaagaacttcaaaatatctgttatcacttaattcaaca |
467 |
Q |
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| T |
28265912 |
ctgaaccgattattccatcaaatatctcaggaaatgacgagtaagctaagaacttcaaaatatctgttatcacttaattcaaca |
28265829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 193 - 254
Target Start/End: Original strand, 26655707 - 26655768
Alignment:
| Q |
193 |
ttacaatagagatacagagtaacacaacaaaatttcaaatttaagcatgataataatcttga |
254 |
Q |
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| T |
26655707 |
ttacaatagagatacaaagtaacacaataaaatgtcaactttaagcatgataataatcttga |
26655768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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