View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3350_low_6 (Length: 470)
Name: NF3350_low_6
Description: NF3350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3350_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 408; Significance: 0; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Complemental strand, 11104395 - 11103956
Alignment:
| Q |
18 |
ccctgttcatagatcaatatatattagatgattttaagatggatatttgagaagcaaatattactagtgaccatataaagtttatgaaattaaaaacata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11104395 |
ccctgttcatagatcaatatatattagatgattttaagatggatatttgagaagcaaaaattactagtgaccatataaagtttatgaaattaaaaacata |
11104296 |
T |
|
| Q |
118 |
ccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcacaac |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
11104295 |
ccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgattttattcacaac |
11104196 |
T |
|
| Q |
218 |
atccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgtcac |
317 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11104195 |
atccaaacgctttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgtcac |
11104096 |
T |
|
| Q |
318 |
aaaaaagacttttcatttactttattttagggttaaatatgattttgttccttacatttctagtatattttgattttaatccgtgatagttttttattta |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
11104095 |
aaaaaagacttttcatttactttattttagggttaaatatgattttgttccttacatttctagtatatttttattttaatacgtgatagttttttattta |
11103996 |
T |
|
| Q |
418 |
aattcagtctttacgaatattataattgttcttagagtct |
457 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
11103995 |
aatttagtctttacgaatattataattgttcttagagtct |
11103956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 110 - 320
Target Start/End: Complemental strand, 11095844 - 11095634
Alignment:
| Q |
110 |
aaaacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttga |
209 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||| |
|
|
| T |
11095844 |
aaaacataccagaacagaagctacttgagctgcaatagtaagaatatcagcacaagaaacagtggctggacattcattttcaactgctgtcttgatttgg |
11095745 |
T |
|
| Q |
210 |
ttcacaacatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagc |
309 |
Q |
| |
|
|| |||||||||||||| |||||||||||| ||||||||| ||||||||| ||||| || || |||| |||||||||||||||||||||||||||||| | |
|
|
| T |
11095744 |
tttacaacatccaaaccccttaatgagtttatgtttggaagtgcatcttgctcacttactatggtattagtgttgttcaacaaaactgatccatcacaac |
11095645 |
T |
|
| Q |
310 |
cctgtcacaaa |
320 |
Q |
| |
|
||||||||||| |
|
|
| T |
11095644 |
cctgtcacaaa |
11095634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 115 - 314
Target Start/End: Complemental strand, 11145444 - 11145245
Alignment:
| Q |
115 |
ataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcac |
214 |
Q |
| |
|
||||||| |||| |||| |||||| |||| || ||||||||||||||||||||| |||||||| || | | ||| |||||||| |||||||||||||| |
|
|
| T |
11145444 |
ataccagtgtagatgataattcagcagcaagagcaagaatatcagcacaagaaactgtgttagggcaagccttttctactgctgttttgatttgattcac |
11145345 |
T |
|
| Q |
215 |
aacatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgt |
314 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| ||| ||||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
11145344 |
aacatccaaacctctcaatgagtttctgtttggaaaagcatcttgttcactgacaatagtagcagtgttattcaacaaaactgatgcatcacaaccctgt |
11145245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 149 - 314
Target Start/End: Complemental strand, 11149344 - 11149179
Alignment:
| Q |
149 |
aagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcacaacatccaaacctcttaatgagtttctgtttgga |
248 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| | | ||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
11149344 |
aagaatatcagcgcaagaaactgtgttaggacaagccttttccacagctgttttgatttgattcacaacatctaaacctcttaatgagtttctgtttgga |
11149245 |
T |
|
| Q |
249 |
aatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgt |
314 |
Q |
| |
|
|| ||||||||||||||||||| |||||||| ||||||| ||||||||| ||||||| |||||| |
|
|
| T |
11149244 |
aaagcatcttgttcactcacaacggtatcagttttgttcagtaaaactgatgcatcacaaccctgt |
11149179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 149 - 319
Target Start/End: Complemental strand, 11137111 - 11136941
Alignment:
| Q |
149 |
aagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcacaacatccaaacctcttaatgagtttctgtttgga |
248 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| | | ||| |||||||| |||||||||||||||||||||||||||| || ||||| | ||||| |
|
|
| T |
11137111 |
aagaatatcagcacaagaaactgtgttaggacaagccttttccactgctgttttgatttgattcacaacatccaaacctcgtagagagttgatatttggg |
11137012 |
T |
|
| Q |
249 |
aatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgtcacaa |
319 |
Q |
| |
|
|| || ||||||||||||||||| |||||||| |||||||| ||||||||| ||||||| |||||| |||| |
|
|
| T |
11137011 |
aaagcttcttgttcactcacaatggtatcagttttgttcaataaaactgatgcatcacaaccctgttacaa |
11136941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 116 - 314
Target Start/End: Complemental strand, 11110292 - 11110094
Alignment:
| Q |
116 |
taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcaca |
215 |
Q |
| |
|
|||||||| |||||||| | ||| |||| ||||||||||||||||||||||| | ||||| || ||| ||| ||| |||||||||||||| | | |
|
|
| T |
11110292 |
taccagaacagaagatattccagacgcaagtgtaagaatatcagcacaagaaactctattagggcaagctttttccactttagtcttgatttgattgata |
11110193 |
T |
|
| Q |
216 |
acatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgt |
314 |
Q |
| |
|
|||||||| |||||||| ||||| | |||||||| |||||||||||||||||||| || | ||||| ||||||||||||||| ||||||| |||||| |
|
|
| T |
11110192 |
acatccaatcctcttaaggagttgatatttggaaaagcatcttgttcactcacaatagttgcggtgttattcaacaaaactgatgcatcacaaccctgt |
11110094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 112 - 238
Target Start/End: Complemental strand, 11171372 - 11171246
Alignment:
| Q |
112 |
aacataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgatt |
211 |
Q |
| |
|
|||||||||||| ||| || | |||||| |||| || ||||||||||||||||||||||||||||||||| | | ||| |||||||| ||||||||||| |
|
|
| T |
11171372 |
aacataccagaacagaggaaatttcagcagcaagagcaagaatatcagcacaagaaacagtgttaggacaagcattttccactgctgttttgatttgatt |
11171273 |
T |
|
| Q |
212 |
cacaacatccaaacctcttaatgagtt |
238 |
Q |
| |
|
||||||||| |||||||||| |||||| |
|
|
| T |
11171272 |
cacaacatctaaacctcttattgagtt |
11171246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 116 - 314
Target Start/End: Complemental strand, 11155760 - 11155562
Alignment:
| Q |
116 |
taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcaca |
215 |
Q |
| |
|
|||||||| ||| ||| ||| ||| |||| || ||||||||||||||||||||| ||||||||||| | ||| | || || ||||| ||||| ||| |
|
|
| T |
11155760 |
taccagaacagaggatgcttgagcagcaagagcaagaatatcagcacaagaaactgtgttaggacaagcactttctatagcagttttgatctgatttaca |
11155661 |
T |
|
| Q |
216 |
acatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctgt |
314 |
Q |
| |
|
||||||||||||||||| ||||| | |||||||| || | |||||| || || || ||| |||| |||||||||||||| || ||||||| |||||| |
|
|
| T |
11155660 |
acatccaaacctcttaaagagttgttatttggaaaagcttgttgttcgcttacgatcgtagcagtattgttcaacaaaaccgaggcatcacatccctgt |
11155562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 116 - 313
Target Start/End: Complemental strand, 11118296 - 11118099
Alignment:
| Q |
116 |
taccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcaca |
215 |
Q |
| |
|
|||||||| ||||||||| ||||||||| || |||||||||||||||||||| | |||||||| ||| ||| || | || || || ||||| | | |
|
|
| T |
11118296 |
taccagaactgaagatactccagctgcaagtgtgagaatatcagcacaagaaactttattaggacaaactttttccacctcagttttaatctgattgata |
11118197 |
T |
|
| Q |
216 |
acatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcacagccctg |
313 |
Q |
| |
|
|||||||| | |||||| |||||| | |||||| ||||||||||||||| |||| ||| ||| || ||||||||||||||| ||||||| ||||| |
|
|
| T |
11118196 |
acatccaatcttcttaaggagtttatatttggaccagcatcttgttcactcgcaatagtagaagttttattcaacaaaactgatgcatcacaaccctg |
11118099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 201 - 312
Target Start/End: Original strand, 11191956 - 11192067
Alignment:
| Q |
201 |
ttgatttgattcacaacatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatc |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| ||||| || || |||| |||||||| || ||||||| || |||||||| | |||| |
|
|
| T |
11191956 |
ttgatttgattcacaatatccaaacctcttattgagtttctatttggcaaagctccttgctcactcacgatagtatcagagtcattcaacaagagtgatg |
11192055 |
T |
|
| Q |
301 |
catcacagccct |
312 |
Q |
| |
|
||||||| |||| |
|
|
| T |
11192056 |
catcacaaccct |
11192067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 115 - 181
Target Start/End: Complemental strand, 11177375 - 11177309
Alignment:
| Q |
115 |
ataccagaatagaagatacttcagctgcaatagtaagaatatcagcacaagaaacagtgttaggaca |
181 |
Q |
| |
|
|||||||| |||||||| |||||| | || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
11177375 |
ataccagatcagaagatatttcagcagaaagggcaagaatatcagcacaagaaacagtgttaggaca |
11177309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 231
Target Start/End: Original strand, 10794028 - 10794110
Alignment:
| Q |
149 |
aagaatatcagcacaagaaacagtgttaggacattcttcttcaactgctgtcttgatttgattcacaacatccaaacctctta |
231 |
Q |
| |
|
||||||||||||||||||||| || ||||| || ||| ||| || |||||||||| |||||||||| | ||||||||||| |
|
|
| T |
10794028 |
aagaatatcagcacaagaaactgtattagggcaagctttttccacgtctgtcttgatacgattcacaacttgcaaacctctta |
10794110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 11200217 - 11200121
Alignment:
| Q |
211 |
tcacaacatccaaacctcttaatgagtttctgtttggaaatgcatcttgttcactcacaattgtatcagtgttgttcaacaaaactgatccatcaca |
307 |
Q |
| |
|
||||||||||||||||||||| ||||| | |||||||| || | |||||| || || ||||| | |||||||||| |||||| ||| ||||||| |
|
|
| T |
11200217 |
tcacaacatccaaacctcttatggagttgatatttggaaaagcttgttgttcgcttacgattgttgctgtgttgttcagcaaaaccgatgcatcaca |
11200121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 376
Target Start/End: Complemental strand, 51906745 - 51906708
Alignment:
| Q |
339 |
ttattttagggttaaatatgattttgttccttacattt |
376 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
51906745 |
ttattttagggttaaatatgattttggtccctacattt |
51906708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University