View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3351_high_12 (Length: 367)
Name: NF3351_high_12
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3351_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 27 - 357
Target Start/End: Original strand, 21507795 - 21508123
Alignment:
| Q |
27 |
ttgttattcgtgcttttcttattcttctttagtgttgttgaattgaaaccaccaccaactaaatcatcttccaacaaacaacactaactgttgaatatag |
126 |
Q |
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| T |
21507795 |
ttgttattcgtgcttttcttattcttctttagtgttgttgaattgaaaccaccacccactaaatcatcttccaacaaacaacactaaatgttgaacataa |
21507894 |
T |
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| Q |
127 |
tgttgaatttaatgttgaacccacatcctattcaacaacatgctgctgcatagaataaatcatctttcaaacccaccacccacacccttcttgttcttct |
226 |
Q |
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| T |
21507895 |
tgttgaacccaccacc--acccacatcctattcaacaacgtgctaccgcatagaataaatcatctttcaaacccaccaccctcacccttcttattcttct |
21507992 |
T |
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| Q |
227 |
ttacaacaacaacactaaatgttcgatgcactaaacctgctaattgaatgctttgtagtaagttagtcaattatccctacgtgaagctaattcaaatagg |
326 |
Q |
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| T |
21507993 |
ttacaacaacaacaccaaatgttcgatgcattaagcctgctaattgaatgctttgtagtaagttagtcaattatccctacgtgaagctaattgaaatagg |
21508092 |
T |
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| Q |
327 |
aaagggataattataatttcaacaccctttg |
357 |
Q |
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| T |
21508093 |
aaagggataattataatttcaacaccctttg |
21508123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 30248872 - 30249181
Alignment:
| Q |
18 |
ctattgctgttgttattcgtgcttttcttattcttctttagtgttgttgaattgaaaccaccaccaactaaatcatcttccaacaaacaacactaactgt |
117 |
Q |
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| T |
30248872 |
ctattgctgttgttattcgtgcttttcttattcttctttagtgttgttgaattgaaaccaccaccaactaaatcatcttccaacaaacaacactaactgt |
30248971 |
T |
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| Q |
118 |
tgaatatagtgttgaatttaatgttgaacccacatcctattcaacaacatgctgctgcatagaataaatcatctttcaaacccaccacccacacccttct |
217 |
Q |
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| T |
30248972 |
t------------gaatttaatgttgaacccacatcctattcaacaacgtgccgctgcatagaataaatcatctttcaaacccaccacccacacccttct |
30249059 |
T |
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| Q |
218 |
tgttcttctttacaacaacaacactaaatgttcgatgcactaaacctgctaattgaatgctttgtagtaagttagtcaattatccctacgtgaagctaat |
317 |
Q |
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| T |
30249060 |
tgttcttctttacaacaacaacactaaatattcgatgcactaagcctgc------------------taagttagtcaattatccctacgtgaagctaat |
30249141 |
T |
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| Q |
318 |
tcaaataggaaagggataattataatttcaacaccctttg |
357 |
Q |
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| T |
30249142 |
tcaaataggaaagggataattataatttcaacaccctttg |
30249181 |
T |
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