View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3351_high_18 (Length: 348)

Name: NF3351_high_18
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3351_high_18
NF3351_high_18
[»] chr8 (1 HSPs)
chr8 (24-348)||(8807976-8808302)
[»] chr2 (2 HSPs)
chr2 (45-128)||(5948950-5949033)
chr2 (45-122)||(34940183-34940260)
[»] chr6 (2 HSPs)
chr6 (44-128)||(27906444-27906528)
chr6 (81-150)||(27905901-27905970)
[»] chr5 (1 HSPs)
chr5 (45-127)||(35037542-35037624)
[»] chr3 (3 HSPs)
chr3 (71-128)||(38970073-38970130)
chr3 (61-120)||(29844117-29844176)
chr3 (46-123)||(32349699-32349776)
[»] chr7 (4 HSPs)
chr7 (49-128)||(28820708-28820787)
chr7 (82-128)||(32155513-32155559)
chr7 (79-128)||(3790059-3790108)
chr7 (83-127)||(36851097-36851141)
[»] chr1 (1 HSPs)
chr1 (82-166)||(21399725-21399809)


Alignment Details
Target: chr8 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 24 - 348
Target Start/End: Complemental strand, 8808302 - 8807976
Alignment:
Q  24 ggggcaagggtaggaataagattcaggggtattgctttaatatggaccgtagaactatatatat--gacttgtaacattgtaaaccctaactcactcaag 121  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||    
T  8808302 ggggtaagggtaggaataagattcaggggtattgctttaatatggaccgtagaactatatatatatgacttgtaacaatgtaaaccctaactcactcaag 8808203  T
Q  122 taatatagaaagttatagctattctatagacgcagaggtaagcacgattagtcatttgaaacgatcgtgttcgattgtttactatttgcatttgctttaa 221  Q
    ||||||||||||||||| ||||||||||| |||||||||||  |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  8808202 taatatagaaagttataactattctatagccgcagaggtaaaaacgattagtcatttgaaacggtcgtgttccattgtttactatttgcatttgctttaa 8808103  T
Q  222 tcttttgttgctagctcttgttcgaacatgcacatataacatatattattttaaaaaacaacttgagattaaattcatatatgtaaaatgactaatacgg 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8808102 tcttttgttgctagctcttgttcgaacatgcacatataacatatattattttaaaaaacaacttgagattaaattcatatatgtaaaatgactaatacgg 8808003  T
Q  322 gctaatattttctattttaaggatagt 348  Q
    |||||||||||||||||||||||||||    
T  8808002 gctaatattttctattttaaggatagt 8807976  T

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Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 128
Target Start/End: Complemental strand, 5949033 - 5948950
Alignment:
Q  45 ttcaggggtattgctttaatatggaccgtagaactatatatatgacttgtaacattgtaaaccctaactcactcaagtaatata 128  Q
    |||| |||||||| | ||||||| ||||||| |||||||||||| ||||||||| ||||||| |||| ||||||||||||||||    
T  5949033 ttcatgggtattgttgtaatatgaaccgtagtactatatatatggcttgtaacactgtaaacactaattcactcaagtaatata 5948950  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 34940183 - 34940260
Alignment:
Q  45 ttcaggggtattgctttaatatggaccgtagaactatatatatgacttgtaacattgtaaaccctaactcactcaagt 122  Q
    ||||||||||||| | |||| |||||||||| |||||||||||| |||||||| ||||||||| ||| ||||||||||    
T  34940183 ttcaggggtattgttctaatctggaccgtagtactatatatatggcttgtaactttgtaaaccttaattcactcaagt 34940260  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 128
Target Start/End: Original strand, 27906444 - 27906528
Alignment:
Q  44 attcaggggtattgctttaatatggaccgtagaactatatatatgacttgtaacattgtaaaccctaactcactcaagtaatata 128  Q
    ||||||| |||||| | ||| ||| | ||||| |||||||| ||||||||||||| |||||||||||| |||||||| |||||||    
T  27906444 attcaggagtattgttgtaagatgaaacgtagtactatataaatgacttgtaacagtgtaaaccctaattcactcaactaatata 27906528  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 27905901 - 27905970
Alignment:
Q  81 tatatatgacttgtaacattgtaaaccctaactcactcaagtaatatagaaagttatagctattctatag 150  Q
    |||||||||||||||| | |||| | ||||| ||||||||||||| || ||| ||||||||  |||||||    
T  27905901 tatatatgacttgtaagactgtacatcctaattcactcaagtaatgtacaaaattatagctgctctatag 27905970  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 35037542 - 35037624
Alignment:
Q  45 ttcaggggtattgctttaatatggaccgtagaactatatatatgacttgtaacattgtaaaccctaactcactcaagtaatat 127  Q
    ||||||| ||||| | || | |||||||||  ||| |||||||| ||||||||||||||||||||||  ||||||||||||||    
T  35037542 ttcagggatattgttctagtctggaccgtaatactgtatatatggcttgtaacattgtaaaccctaatacactcaagtaatat 35037624  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 38970073 - 38970130
Alignment:
Q  71 cgtagaactatatatatgacttgtaacattgtaaaccctaactcactcaagtaatata 128  Q
    ||||| ||||||| |||| ||||||||| |||||||||||| ||||||||||||||||    
T  38970073 cgtagtactatatctatggcttgtaacactgtaaaccctaattcactcaagtaatata 38970130  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 120
Target Start/End: Complemental strand, 29844176 - 29844117
Alignment:
Q  61 taatatggaccgtagaactatatatatgacttgtaacattgtaaaccctaactcactcaa 120  Q
    ||||||||||||||| | |||||||||| ||||||| |||| ||||| ||| ||||||||    
T  29844176 taatatggaccgtagtattatatatatgccttgtaaaattggaaaccttaattcactcaa 29844117  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 32349776 - 32349699
Alignment:
Q  46 tcaggggtattgctttaatatggaccgtagaactatatatatgacttgtaacattgtaaaccctaactcactcaagta 123  Q
    ||||||| |||| | |||| |||||||||| | |||||||||| ||||||| | ||  |||||||| |||||||||||    
T  32349776 tcaggggcattgttgtaatctggaccgtagtattatatatatgccttgtaatactgacaaccctaattcactcaagta 32349699  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 128
Target Start/End: Original strand, 28820708 - 28820787
Alignment:
Q  49 ggggtattgctttaatatggaccgtagaactatatatatgacttgtaacattgtaaaccctaactcactcaagtaatata 128  Q
    ||||||||| | |||| |||||| ||  ||||||||||||  |||||||| ||||||| |||| ||||||||||||||||    
T  28820708 ggggtattgttgtaatttggaccataatactatatatatggtttgtaacactgtaaactctaattcactcaagtaatata 28820787  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 128
Target Start/End: Original strand, 32155513 - 32155559
Alignment:
Q  82 atatatgacttgtaacattgtaaaccctaactcactcaagtaatata 128  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||||    
T  32155513 atatatgacttgtaagatggtaaaccctaattcactcaagtaatata 32155559  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 3790108 - 3790059
Alignment:
Q  79 tatatatatgacttgtaacattgtaaaccctaactcactcaagtaatata 128  Q
    |||| ||||||||||||| |||||||||| ||||||||||||||| ||||    
T  3790108 tatacatatgacttgtaatattgtaaaccttaactcactcaagtagtata 3790059  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 36851141 - 36851097
Alignment:
Q  83 tatatgacttgtaacattgtaaaccctaactcactcaagtaatat 127  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||    
T  36851141 tatattacttgtaacattgtaaaccctaattcactcaaataatat 36851097  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 166
Target Start/End: Complemental strand, 21399809 - 21399725
Alignment:
Q  82 atatatgacttgtaacattgtaaaccctaactcactcaagtaatatagaaagttatagctattctatagacgcagaggtaagcac 166  Q
    ||||||||||||||||| | |||||| ||| || |||||||||||||   | ||||||||| ||||||| | |||||||| ||||    
T  21399809 atatatgacttgtaacactataaaccttaattcgctcaagtaatatacggaattatagctactctatagtctcagaggtaggcac 21399725  T

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