View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3351_high_2 (Length: 609)
Name: NF3351_high_2
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3351_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 18 - 599
Target Start/End: Original strand, 46359062 - 46359642
Alignment:
| Q |
18 |
catattggccactatcagactgatcttcttagcaccaggattctcaatcaactcctacactcctttggattgatgttgtgccaaggaaagaccggactcg |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46359062 |
catattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctacactcctttggattgatgttgtgccaaggaaagaccggactcg |
46359161 |
T |
|
| Q |
118 |
aagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcnnnnnnngaccacaaagtgtaccactgata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
46359162 |
aagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagctttttt-gaccacaaagtgtaccactgata |
46359260 |
T |
|
| Q |
218 |
tgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatccttcctgatgacggcgagatacttggtgacattttatattgctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||| |
|
|
| T |
46359261 |
tgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatccttcctgatgacggcgagatacttggggacgtgttgtattgctt |
46359360 |
T |
|
| Q |
318 |
ttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaatgagagacgcaaaacaaacccaaattggccgctgaagttaagaatgttg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46359361 |
ttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaatgagagacgctaaacaaacccaaattggccgctgaagttaagaatgttg |
46359460 |
T |
|
| Q |
418 |
ttaccacttaatatgatcaaaatgctatgtttnnnnnnngaaactgtacatttggctttcaagatgttgaatgatatccctgaggaagtggacgaccggg |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
46359461 |
ttaccacttaatatgatcaaaatgctatgtttaaaaaaagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccggg |
46359560 |
T |
|
| Q |
518 |
aaaaattgtttaaactcatgctctttacacatgttttcggagccttcaatatacgatatcagtataattattactgcctatg |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46359561 |
aaaaattgtttaaactcatgctctttacacatgttttcggagccttcaatatacgatatcagtataattattactgcctatg |
46359642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 463; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 563
Target Start/End: Original strand, 44460192 - 44460736
Alignment:
| Q |
18 |
catattggccactatcagactgatcttcttagcaccaggattctcaatcaactcctacactcctttggattgatgttgtgccaaggaaagaccggactcg |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44460192 |
catattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctacactcctttggattgatgttgtgccaaggaaagaccggactcg |
44460291 |
T |
|
| Q |
118 |
aagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcnnnnnnngaccacaaagtgtaccactgata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44460292 |
aagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagctttttt-gaccacaaagtgtaccactgata |
44460390 |
T |
|
| Q |
218 |
tgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatccttcctgatgacggcgagatacttggtgacattttatattgctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||| |
|
|
| T |
44460391 |
tgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatccttcctgatgacggcgagatacttggggacgtgttgtattgctt |
44460490 |
T |
|
| Q |
318 |
ttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaatgagagacgcaaaacaaacccaaattggccgctgaagttaagaatgttg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44460491 |
ttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaatgagagacgcaaaacaaacccaaactggccgctgaagttaagaatgttg |
44460590 |
T |
|
| Q |
418 |
ttaccacttaatatgatcaaaatgctatgtttnnnnnnngaaactgtacatttggctttcaagatgttgaatgatatccctgaggaagtggacgaccggg |
517 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
44460591 |
ttaccacttaatatgatccaaatgctatgtttaaaaaaagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccggg |
44460690 |
T |
|
| Q |
518 |
aaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44460691 |
aaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
44460736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 563
Target Start/End: Original strand, 44467725 - 44468269
Alignment:
| Q |
18 |
catattggccactatcagactgatcttcttagcaccaggattctcaatcaactcctacactcctttggattgatgttgtgccaaggaaagaccggactcg |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44467725 |
catattggccactatcagactgaccttcttagcaccaggattctcaatcaactcctacactcctttggattgatgttgtgccaaggaaagaccggactcg |
44467824 |
T |
|
| Q |
118 |
aagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcnnnnnnngaccacaaagtgtaccactgata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44467825 |
aagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagctttttt-gaccacaaagtgtaccactgata |
44467923 |
T |
|
| Q |
218 |
tgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatccttcctgatgacggcgagatacttggtgacattttatattgctt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |||||||| |
|
|
| T |
44467924 |
tgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatccttcctgatgacggcgagatacttggggacgtgttgtattgctt |
44468023 |
T |
|
| Q |
318 |
ttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaatgagagacgcaaaacaaacccaaattggccgctgaagttaagaatgttg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
44468024 |
ttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaatgagagacgcaaaacaaacccaaactggccgctgaagttaagaatgttg |
44468123 |
T |
|
| Q |
418 |
ttaccacttaatatgatcaaaatgctatgtttnnnnnnngaaactgtacatttggctttcaagatgttgaatgatatccctgaggaagtggacgaccggg |
517 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
44468124 |
ttaccacttaatatgatccaaatgctatgtttaaaaaaagaaactgtacatttggctttcaagatgttgaatgatatccccgaggaggtggacgaccggg |
44468223 |
T |
|
| Q |
518 |
aaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
563 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44468224 |
aaaaattgtttaaactcatgctctttacacatgttttcggagcctt |
44468269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 42 - 502
Target Start/End: Complemental strand, 34502460 - 34502006
Alignment:
| Q |
42 |
cttcttagcaccaggattctcaatcaactcctacactcctttggattgatgttgtgccaaggaaagaccggactcgaagtttttcataaatttgaggcat |
141 |
Q |
| |
|
||||||| ||| |||||||| ||||||||||||| ||| ||| ||| |||||| ||||||||||| | || |||||||||||||||||||||||||| |
|
|
| T |
34502460 |
cttcttaacacacggattctctatcaactcctacattcccttgcatttatgttggaccaaggaaagattgcacccgaagtttttcataaatttgaggcat |
34502361 |
T |
|
| Q |
142 |
ttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcnnnnnnngaccacaaagtgtaccactgatatgatccaccaagccgcttctatgt |
241 |
Q |
| |
|
||||||| |||||||||| ||||||||| | | ||| ||| |||| || ||||| |||| ||||||||||| |||||||||||||||||| | |
|
|
| T |
34502360 |
ttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctctttt-gatcacaagatgtatcactgatatgacccaccaagccgcttctatct |
34502262 |
T |
|
| Q |
242 |
gtcaaaagatgctgcttcatccagaaaccatccttcctgatgacggcgagatacttggtgacattttatattgcttttttaaaagaaatatgattaaaga |
341 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||| || ||| |||| || | ||| || || ||| ||||||||||||||| |
|
|
| T |
34502261 |
gtcaaaagatgctgcttcatccagaaaccgtccttcctgataacggtgacataattggccacttgttaagtttctc-----aaaaaaatatgattaaaga |
34502167 |
T |
|
| Q |
342 |
agcctatgctctctttctggctgcaaatgagagacgcaaaacaaacccaaattggccgctgaagttaagaatgttgttaccacttaatatgatcaaaatg |
441 |
Q |
| |
|
|||||||||||||| | ||||||||||||||| |||||||||||||||||| ||| |||||||||||| |||||| |||||| | |||| ||||||||| |
|
|
| T |
34502166 |
agcctatgctctctatatggctgcaaatgagaaacgcaaaacaaacccaaactggtcgctgaagttaaaaatgttattaccattgaatacgatcaaaata |
34502067 |
T |
|
| Q |
442 |
ctatgtttnnnnnnngaaactgtacatttggctttcaagatgttgaatgatatccctgagg |
502 |
Q |
| |
|
|| ||||| ||||| |||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
34502066 |
ctttgtttaagaaaggaaacggtacatctggctttggagatgttgaatgatatccctgagg |
34502006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Complemental strand, 34501880 - 34501841
Alignment:
| Q |
560 |
ccttcaatatacgatatcagtataattattactgcctatg |
599 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
34501880 |
ccttcaatatatgatatcagtataattattactgcctatg |
34501841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Original strand, 44460804 - 44460843
Alignment:
| Q |
560 |
ccttcaatatacgatatcagtataattattactgcctatg |
599 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44460804 |
ccttcaatatatgatatcagtataattattactgcctatg |
44460843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 560 - 599
Target Start/End: Original strand, 44468337 - 44468376
Alignment:
| Q |
560 |
ccttcaatatacgatatcagtataattattactgcctatg |
599 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
44468337 |
ccttcaatatatgatatcagtataattattactgcctatg |
44468376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 3e-40; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 392
Target Start/End: Complemental strand, 38605222 - 38604846
Alignment:
| Q |
18 |
catattggccactatcagactgatcttcttagcaccaggattctcaatcaactcctacactcctttggattgatgttgtgccaaggaaagaccggactcg |
117 |
Q |
| |
|
||||||||||| | |||||| |||||||| |||| ||||||||||||||||||| | || ||||||| ||| | |||||| ||||| | |||| |
|
|
| T |
38605222 |
catattggccattccgagactggtcttcttaacacccagattctcaatcaactcctagattcatttggatatgtgtgggaccaaggtaagactgcactcc |
38605123 |
T |
|
| Q |
118 |
aagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaag--cnnnnnnngaccacaaagtgtaccactga |
215 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||| ||||||||| |||||||| ||| ||| ||| | ||| |||| || | |||| |
|
|
| T |
38605122 |
aagtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctga |
38605023 |
T |
|
| Q |
216 |
tatgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatccttcctgatgacggcgagatacttggtgacattttatattgc |
315 |
Q |
| |
|
|||| |||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||| || || ||| |||||| | | ||| ||| |
|
|
| T |
38605022 |
tatgctccagcaagccgcttctatctgtcaaaagattgtgcttcatccagaaaccctccttcctgatgatggtgaaataattggtgtcttgttagtttgg |
38604923 |
T |
|
| Q |
316 |
ttttttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaatgagagacgcaaaacaaacccaaa |
392 |
Q |
| |
|
| || ||||| ||||||||||||||||| |||||| ||| |||||||||||| |||| ||| |||||||| ||||| |
|
|
| T |
38604922 |
tcttctaaaaataatatgattaaagaagcatatgctatctatctggctgcaaaggagaaacggaaaacaaatccaaa |
38604846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 120 - 392
Target Start/End: Complemental strand, 40180615 - 40180344
Alignment:
| Q |
120 |
gtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcnnnnnnngaccacaaagtgtaccactgatatg |
219 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||| |||||||||||||||||| ||| |||||||| | || | | | | |||||| | |
|
|
| T |
40180615 |
gtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagctatttgtg-gcatagattacagtactgatgta |
40180517 |
T |
|
| Q |
220 |
atccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatccttcctgatgacggcgagatacttggtgacattttatattgctttt |
319 |
Q |
| |
|
|||| ||||||||||| || |||||||||||| ||||||| ||||| || ||||||||||||| || ||||||||||| | | ||| ||| |||| |
|
|
| T |
40180516 |
ctccagcaagccgcttccatatgtcaaaagatggtgcttcaaccagatactctccttcctgatgatggtaagatacttggtcgcttgttaacttggtttt |
40180417 |
T |
|
| Q |
320 |
ttaaaagaaatatgattaaagaagcctatgctctctttctggctgcaaatgagagacgcaaaacaaacccaaa |
392 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| || ||| |||||||||| ||| |||| ||||||||| |
|
|
| T |
40180416 |
ctaaaaataatatgattaaagaagcctatgctctctatcgggcagcaaatgagaaacggaaaagaaacccaaa |
40180344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 120 - 170
Target Start/End: Original strand, 41885933 - 41885983
Alignment:
| Q |
120 |
gtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatat |
170 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||| ||||||||||||||| |
|
|
| T |
41885933 |
gtttttcataaatttgaggcttttcaatgtgagccaaatcaagatacatat |
41885983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 40181351 - 40181263
Alignment:
| Q |
99 |
caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagc |
187 |
Q |
| |
|
||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||||||| | |||| |||||||| |
|
|
| T |
40181351 |
caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacatattactatacactgcaagc |
40181263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 40180765 - 40180712
Alignment:
| Q |
18 |
catattggccactatcagactgatcttcttagcaccaggattctcaatcaactc |
71 |
Q |
| |
|
|||||||||||||||||||| | | |||||| ||| ||||||||||||||||| |
|
|
| T |
40180765 |
catattggccactatcagaccggtattcttaacactcggattctcaatcaactc |
40180712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 215 - 285
Target Start/End: Original strand, 411026 - 411096
Alignment:
| Q |
215 |
atatgatccaccaagccgcttctatgtgtcaaaagatgctgcttcatccagaaaccatccttcctgatgac |
285 |
Q |
| |
|
||||| |||| ||||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
411026 |
atatgctccagcaagcggcttctatctgtcaaaagatgctgcttcatccagaaaccctccttcccgatgac |
411096 |
T |
|
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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 410925 - 410977
Alignment:
| Q |
117 |
gaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacata |
169 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || || |||||||||||||| |
|
|
| T |
410925 |
gaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacata |
410977 |
T |
|
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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 9161370 - 9161423
Alignment:
| Q |
117 |
gaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatat |
170 |
Q |
| |
|
|||||||||||| ||||||||| |||||||| || ||||||||||| |||||| |
|
|
| T |
9161370 |
gaagtttttcattaatttgaggtctttcaatgtgttccgaatcaagagacatat |
9161423 |
T |
|
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