View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3351_high_20 (Length: 327)
Name: NF3351_high_20
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3351_high_20 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 29422976 - 29422661
Alignment:
| Q |
1 |
tcagtttctgttatcagttgatagtgatgttatttagttagttctattaatctgctaactgtgactctttttatgatcaaattatggtgtgaattgcact |
100 |
Q |
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| T |
29422976 |
tcagtttctgttatcagttgatagtgatgttatttagttagttctattaatctgccaactgtgactctttttatgatcaaattatggtgtgaattgcaat |
29422877 |
T |
|
| Q |
101 |
caatcactgtatcatttggtgctttcattgccttctgagttattataacaggaataaaactttaaaaaacacagtaaattccttgaaatgcatatgactt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29422876 |
caatcactgtatcatttggtgctttcattgccttctgagttattataacaggaataaaactttaaaaaacacagtaaattccttgaaatgcatatgactt |
29422777 |
T |
|
| Q |
201 |
atgagtataactttgtgaggctatttccttggattatcacaaaggcaacctcaacagaaaatcatagatactccaacagtatgtcagcaaagtcatgaca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
29422776 |
atgagtataactttgtgaggctatttccttggattatcacaaaggcaacctcaacagaaaatcatagatactccaacagtatatcagcaaagtcatgaca |
29422677 |
T |
|
| Q |
301 |
aatcagaagaacattc |
316 |
Q |
| |
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||| ||||||||||| |
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| T |
29422676 |
aatgggaagaacattc |
29422661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 29419733 - 29419589
Alignment:
| Q |
87 |
gtgtgaattgcactcaatcactgtatcatttggtgctttcattgccttct--gagtta-ttataacagg--aataaaactttaaaaaacacagtaaattc |
181 |
Q |
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| T |
29419733 |
gtgtgaattgcattcattcactatatcattcggttctttctttgtcttctctgagatacttataacaggggaataaagcttaaaaaca-acagtaaattc |
29419635 |
T |
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| Q |
182 |
cttgaaatgcatatgacttatgagtataactttgtgaggctatttc |
227 |
Q |
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| T |
29419634 |
cttgaaatgcataggatttataagtataactttgtgaggccatttc |
29419589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 29458731 - 29458647
Alignment:
| Q |
230 |
tggattatcacaaaggcaacctcaacagaaaatcatagatactccaacagtatgtcagcaaagtcatgacaaatcagaagaacat |
314 |
Q |
| |
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||||||||||||||||||| |||| ||| |||||||| |||||||||| |||| |||| |||||||| |||||| | |||||||| |
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| T |
29458731 |
tggattatcacaaaggcaaactcatcaggaaatcataaatactccaacggtatatcagaaaagtcataacaaatgaaaagaacat |
29458647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 2 - 52
Target Start/End: Complemental strand, 29459161 - 29459112
Alignment:
| Q |
2 |
cagtttctgttatcagttgatagtgatgttatttagttagttctattaatc |
52 |
Q |
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| T |
29459161 |
cagtttctgttatcagttgataatcatgtta-ttagttagttctattaatc |
29459112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 29458966 - 29458911
Alignment:
| Q |
164 |
aaaaaacacagtaaattccttgaaatgcatatgacttatgagtataactttgtgag |
219 |
Q |
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|||||| || ||||||||||||||||||||| || || ||||||||| |||||||| |
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| T |
29458966 |
aaaaaaaactgtaaattccttgaaatgcataggatttgtgagtataaatttgtgag |
29458911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 24338463 - 24338357
Alignment:
| Q |
87 |
gtgtgaattgcactcaatcactgtatcatttggtgctttcattgcctt--ctgagtta-ttataacaggaataaaactttaaaaaacacagtaaattcct |
183 |
Q |
| |
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|||||||||||| ||| ||||| ||||||||||||||||| ||| ||| ||||| || || ||||| ||||||| | ||||||| ||||||||||||| |
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| T |
24338463 |
gtgtgaattgcattcattcactctatcatttggtgctttctttgtctttcctgagatacttttaacacgaataaagc-ttaaaaacaacagtaaattcct |
24338365 |
T |
|
| Q |
184 |
tgaaatgc |
191 |
Q |
| |
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| |||||| |
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| T |
24338364 |
taaaatgc |
24338357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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