View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3351_high_30 (Length: 247)

Name: NF3351_high_30
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3351_high_30
NF3351_high_30
[»] chr2 (4 HSPs)
chr2 (1-118)||(13016919-13017036)
chr2 (116-240)||(13015990-13016118)
chr2 (19-206)||(11272450-11272637)
chr2 (1-197)||(1479434-1479628)
[»] chr1 (1 HSPs)
chr1 (2-187)||(32774124-32774309)
[»] chr6 (4 HSPs)
chr6 (1-193)||(1034201-1034394)
chr6 (1-158)||(2920962-2921119)
chr6 (68-158)||(18246572-18246662)
chr6 (130-197)||(32548941-32549008)
[»] chr8 (6 HSPs)
chr8 (1-167)||(8273738-8273904)
chr8 (1-206)||(9936298-9936506)
chr8 (1-184)||(37269843-37270025)
chr8 (1-184)||(42941142-42941325)
chr8 (82-184)||(36404064-36404166)
chr8 (1-41)||(37484904-37484944)
[»] chr7 (2 HSPs)
chr7 (1-192)||(42460093-42460284)
chr7 (68-158)||(31234771-31234861)
[»] chr3 (3 HSPs)
chr3 (106-206)||(53553627-53553728)
chr3 (68-158)||(1259319-1259409)
chr3 (68-158)||(37242607-37242697)
[»] chr5 (1 HSPs)
chr5 (1-167)||(36988931-36989097)
[»] chr4 (3 HSPs)
chr4 (68-184)||(2282212-2282328)
chr4 (68-158)||(16989575-16989665)
chr4 (106-167)||(4913370-4913431)
[»] scaffold0760 (1 HSPs)
scaffold0760 (91-184)||(1722-1815)


Alignment Details
Target: chr2 (Bit Score: 114; Significance: 6e-58; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 13017036 - 13016919
Alignment:
Q  1 atttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  13017036 atttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagtggtttcttgggttt 13016937  T
Q  101 ggacgttgagtagattaa 118  Q
    ||||||||||||||||||    
T  13016936 ggacgttgagtagattaa 13016919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 116 - 240
Target Start/End: Complemental strand, 13016118 - 13015990
Alignment:
Q  116 taaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctgtttttggatctgc----ttaagg 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    ||||||    
T  13016118 taaagataacctcttttctcttttatgagtggacttggaatccgagagagtgccttaatagaagatgaatggtgctgtttttggatctgcttaattaagg 13016019  T
Q  212 ggtttgtgttgatctcgggcccctctgtg 240  Q
    |||||||||||||||||||||||||||||    
T  13016018 ggtttgtgttgatctcgggcccctctgtg 13015990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 11272450 - 11272637
Alignment:
Q  19 gaaagaaatgctaggatttttaagaa-caaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttggacgttgagtagatta 117  Q
    ||||||||||| |||||||| || || |||||  |||||||| |||||| | ||| |||| || |||||||||||||||||||||||||||||||| |||    
T  11272450 gaaagaaatgcaaggattttcaataatcaaaga-aaggaagtggaggaaattgtgaatgaaatcaaagcggtttcttgggtttggacgttgagtaggtta 11272548  T
Q  118 aagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctgtttttggatctgct 206  Q
    |||||| | ||||| ||||| |||||||| ||||||| ||| |||||||||   ||||||||||||| |  ||||||||||||||||||    
T  11272549 aagatagcttctttcctcttctatgagtgaacttggattcctagagagtgcccaaatagaagatgaacgacgctgtttttggatctgct 11272637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 1479628 - 1479434
Alignment:
Q  1 atttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggttt 100  Q
    ||||||| || ||||| |||||||||||| |||||||| |  ||||||| |||||| || || ||  |||| || ||||| ||||||||||| |||| ||    
T  1479628 atttggttgacttggaaggaaagaaatgcaaggattttcaccaacaaagagaaggaggtggaagaggtagttgacgagatcaaagcggtttcgtgggatt 1479529  T
Q  101 ggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctgttttt 197  Q
    ||||| ||||||||||||||||| | || || ||||||||||||||||||||||||||   ||||||| | |||| ||||||||  |||||||||||    
T  1479528 ggacgctgagtagattaaagatagcatcgttcctcttttatgagtggacttggaatcc--tagagtgcctaaataaaagatgaaatgtgctgttttt 1479434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 2 - 187
Target Start/End: Complemental strand, 32774309 - 32774124
Alignment:
Q  2 tttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtttg 101  Q
    |||||| |||||||| |||||||||||| ||||| || || ||| ||  |||||| || |||||  ||||||||||||| ||||||||||||||||||||    
T  32774309 tttggttgatttggaaggaaagaaatgcaaggatcttcaacaaccaaacgaaggaggttgaggatttagtggatgagatcaaagcggtttcttgggtttg 32774210  T
Q  102 gacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatgg 187  Q
    |||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||||||||| | ||||||||||||||||    
T  32774209 gacgttgagtagattaaagatagcctcattcctcttttatgagtggacttggaatcctagagagtgcctaaatagaagatgaatgg 32774124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 98; Significance: 2e-48; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 1034201 - 1034394
Alignment:
Q  1 atttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggttt 100  Q
    ||||||| |||||||| |||||||||||| ||||||||||| ||||||| |||||| || |  ||  ||||||||||||| |||||||||||||||||||    
T  1034201 atttggttgatttggaaggaaagaaatgcaaggatttttaataacaaagcgaaggaggttggtgagatagtggatgagattaaagcggtttcttgggttt 1034300  T
Q  101 ggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaata-gaagatgaatggtgctgt 193  Q
    ||||||||||||||||||||||| | || || |||||||||||||||||||||||||| | ||||||| | |||| | ||||||| ||||||||    
T  1034301 ggacgttgagtagattaaagatagcatcgttcctcttttatgagtggacttggaatcctaaagagtgcctaaatagggagatgaaaggtgctgt 1034394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 2921119 - 2920962
Alignment:
Q  1 atttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggttt 100  Q
    |||||||||||||||| ||||||||| || ||||| || || ||| ||  |||||| || |||||| | ||||| || || |||||  ||||||||||||    
T  2921119 atttggtcgatttggaaggaaagaaacgcaaggatcttcaataaccaaaggaaggatgtggaggaaattgtggacgatattaaagcactttcttgggttt 2921020  T
Q  101 ggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 158  Q
    ||| ||||||||| ||||||||| | ||||| ||||||||||||||||| ||||||||    
T  2921019 ggatgttgagtaggttaaagatagcttctttcctcttttatgagtggacatggaatcc 2920962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 18246662 - 18246572
Alignment:
Q  68 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 158  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  18246662 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 18246572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 32548941 - 32549008
Alignment:
Q  130 tttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctgttttt 197  Q
    |||||||||||| ||||||||| |||||| ||| | ||  | ||||||||||||| ||||||||||||    
T  32548941 tttctcttttataagtggacttagaatcctagataatgtctaaatagaagatgaagggtgctgttttt 32549008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 8273738 - 8273904
Alignment:
Q  1 atttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggttt 100  Q
    |||||||||||||||| |||||||||||| ||||||||||| ||  || |||| ||||| |||||  ||||||||||||| || ||||||||||||||||    
T  8273738 atttggtcgatttggaaggaaagaaatgcaaggatttttaacaatcaaatgaaagaagtggaggagttagtggatgagattaaggcggtttcttgggttt 8273837  T
Q  101 ggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtg 167  Q
    |||||  |||||||||||||||| | ||||| |||||||||||||||| ||||||||| ||||||||    
T  8273838 ggacgacgagtagattaaagatagcttctttcctcttttatgagtggatttggaatcctagagagtg 8273904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 9936298 - 9936506
Alignment:
Q  1 atttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggttt 100  Q
    ||||||| |||||||||||||||||||||  ||||||| ||  |||||| |||||| || | |||  |||||||||||||  ||||||| |||||||| |    
T  9936298 atttggttgatttggatggaaagaaatgcacggattttcaatcacaaagagaaggatgttggggagttagtggatgagattgaagcggtgtcttgggtgt 9936397  T
Q  101 ggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctg---ttttt 197  Q
    ||| |||||| ||| |||||||| | || || ||||||||||||||||||||||| || ||| ||||| | ||||||||||||| |||||||   |||||    
T  9936398 ggatgttgagcagactaaagatagcatcgttcctcttttatgagtggacttggaaccctagacagtgcctaaatagaagatgaaaggtgctggctttttt 9936497  T
Q  198 ggatctgct 206  Q
    |||||||||    
T  9936498 ggatctgct 9936506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 37270025 - 37269843
Alignment:
Q  1 atttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggttt 100  Q
    |||||| ||||||||| |||| ||||||| ||||||||||||||  ||| |||||| || || ||  | ||||| || || ||||   | |||||| |||    
T  37270025 atttggacgatttggaaggaa-gaaatgcgaggatttttaagaatcaagcgaaggatgtggatgagattgtggaggaaatcaaagttatatcttggtttt 37269927  T
Q  101 ggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaa 184  Q
    ||  |||||||||| | |||||| | || || |||||||||||||||||||||||||| ||||| ||  |||||||||||||||    
T  37269926 gggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 37269843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 42941142 - 42941325
Alignment:
Q  1 atttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggttt 100  Q
    |||||| ||||||||| ||||| |||||| ||||||||||||||  ||| |||||| || || ||  | ||||| || || ||||   | |||||| ||     
T  42941142 atttggacgatttggaaggaaaaaaatgcgaggatttttaagaatcaagcgaaggatgtggatgagattgtggaggaaatcaaagttttatcttggtttg 42941241  T
Q  101 ggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaa 184  Q
    ||  |||||||||| |||||||| | || || |||||||||||||||||||||||||| ||||| ||   ||||||||||||||    
T  42941242 gggtgttgagtagactaaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcgtaatagaagatgaa 42941325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 36404166 - 36404064
Alignment:
Q  82 aaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagat 181  Q
    |||| ||| |||||| ||||| ||||||||||| | |||||| | || || ||||| || ||||||||||||||||| ||||| || || ||||||||||    
T  36404166 aaagtggtatcttggttttgggcgttgagtagacttaagatagcttccttcctcttctacgagtggacttggaatcctagagaatgtttaaatagaagat 36404067  T
Q  182 gaa 184  Q
    |||    
T  36404066 gaa 36404064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37484944 - 37484904
Alignment:
Q  1 atttggtcgatttggatggaaagaaatgctaggatttttaa 41  Q
    |||||||| ||||||| |||||| |||||||||||||||||    
T  37484944 atttggtcaatttggaaggaaaggaatgctaggatttttaa 37484904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 42460284 - 42460093
Alignment:
Q  1 atttggtcgatttggatggaaagaaatgctaggatttttaagaacaaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggttt 100  Q
    ||||||| |||||||| ||||||||||||  ||||||| ||  | |||| |||||| || | |||  ||||||||||||| |||||||| |||||||| |    
T  42460284 atttggttgatttggaaggaaagaaatgcccggattttcaatcaaaaagagaaggatgttggggagttagtggatgagattaaagcggtgtcttgggtgt 42460185  T
Q  101 ggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctg 192  Q
    |||   |||| ||  |||||||| | || || ||||||||||||| |||||||||||| ||||||||| | ||||||||||||| |||||||    
T  42460184 ggatactgagcaggctaaagatagcatcgttcctcttttatgagtagacttggaatcctagagagtgcctaaatagaagatgaaaggtgctg 42460093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 31234861 - 31234771
Alignment:
Q  68 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 158  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||||||||||||    
T  31234861 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacttggaatcc 31234771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 206
Target Start/End: Complemental strand, 53553728 - 53553627
Alignment:
Q  106 ttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaatggtgctg-tttttggatctg 204  Q
    |||||||||||||||||| | ||||| |||||||||||||||||||||||||| ||||||||| | ||||| ||||||| || |||| ||||||||||||    
T  53553728 ttgagtagattaaagatagcttctttcctcttttatgagtggacttggaatcctagagagtgcctaaataggagatgaaaggcgctgttttttggatctg 53553629  T
Q  205 ct 206  Q
    ||    
T  53553628 ct 53553627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 1259409 - 1259319
Alignment:
Q  68 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 158  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  1259409 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 1259319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 37242697 - 37242607
Alignment:
Q  68 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 158  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  37242697 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 37242607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 36988931 - 36989097
Alignment:
Q  1 atttggtcgatttggatggaaagaaatgctaggatttttaagaa-caaagtgaaggaagtagaggaactagtggatgagataaaagcggtttcttgggtt 99  Q
    ||||||| |||||||| |||||||||||| ||||||||||| || | ||| |||| | || |||||| ||||| | || || ||||||||||||||||||    
T  36988931 atttggttgatttggaaggaaagaaatgcgaggatttttaataatctaag-gaagaatgtggaggaaatagtgaacgaaatcaaagcggtttcttgggtt 36989029  T
Q  100 tggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtg 167  Q
    |||  ||||||||| || |||||| | ||||| ||||| ||| ||||||| |||||||| ||||||||    
T  36989030 tggttgttgagtaggttgaagatagcttctttcctcttctataagtggacgtggaatcctagagagtg 36989097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 68 - 184
Target Start/End: Original strand, 2282212 - 2282328
Alignment:
Q  68 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtg 167  Q
    ||||||||||||| ||||||||||||||||| ||| | |||||||||||||||| | | || || ||||| ||||| ||||||| ||| || || || ||    
T  2282212 tagtggatgagattaaagcggtttcttgggtgtggtcattgagtagattaaagaaagcatcgttcctcttctatgaatggacttagaaccctagggaatg 2282311  T
Q  168 ctttaatagaagatgaa 184  Q
    | | |||||||||||||    
T  2282312 cctaaatagaagatgaa 2282328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 158
Target Start/End: Original strand, 16989575 - 16989665
Alignment:
Q  68 tagtggatgagataaaagcggtttcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatcc 158  Q
    ||||| |||| || |||||| ||||||||||||||| ||||||||| || |||||| | ||||| ||||| ||||||||||| ||||||||    
T  16989575 tagtgaatgaaattaaagcgctttcttgggtttggatgttgagtaggttgaagatagcttctttcctcttctatgagtggacgtggaatcc 16989665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 167
Target Start/End: Complemental strand, 4913431 - 4913370
Alignment:
Q  106 ttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtg 167  Q
    ||||||||||| | |||| | |||| ||||||||| ||||||  ||||||||||||||||||    
T  4913431 ttgagtagattgaggatagcttcttgtctcttttacgagtggtgttggaatccgagagagtg 4913370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0760 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 1815 - 1722
Alignment:
Q  91 tcttgggtttggacgttgagtagattaaagataacctcttttctcttttatgagtggacttggaatccgagagagtgctttaatagaagatgaa 184  Q
    |||||| |||||  |||||||||| | |||||| | || || |||||||||||||||||||||||||| ||||| ||  |||||||||||||||    
T  1815 tcttggttttgggtgttgagtagacttaagatagcttccttcctcttttatgagtggacttggaatcctagagaatgtcttaatagaagatgaa 1722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University