View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3351_high_32 (Length: 238)
Name: NF3351_high_32
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3351_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 31582312 - 31582081
Alignment:
| Q |
1 |
ctacacacatacacgtacacatattcatgcattattgaagtattattatttttaaatagtagtagacat-----------cacaaatattattaatcgtt |
89 |
Q |
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| T |
31582312 |
ctacacacatacacgtacacatattcatgcattattgaagtattattatttttaaatagtagtagacatgtaaaagccatcacaaatattattaatcgtt |
31582213 |
T |
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| Q |
90 |
ttatatttttaaattattcaaacttttaataaaaatatagttcaccttaaatataaaacatggcccaagtctcatgttatttatgtctatgtcataaatc |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31582212 |
ttatatttttaaattattcaaacttttaataaaaatatagttcaccttaaatataaaacatggcccaagtctcatgttatttatgtctatgtcataaatc |
31582113 |
T |
|
| Q |
190 |
ttacacatacatttctagaaaattgcattatt |
221 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31582112 |
ttacacatacatttctagaaaattgcattatt |
31582081 |
T |
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