View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3351_high_33 (Length: 236)

Name: NF3351_high_33
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3351_high_33
NF3351_high_33
[»] chr2 (3 HSPs)
chr2 (1-222)||(13017054-13017267)
chr2 (33-142)||(11272274-11272383)
chr2 (4-148)||(1479650-1479794)
[»] chr6 (2 HSPs)
chr6 (1-145)||(1034039-1034183)
chr6 (35-148)||(2921170-2921283)
[»] chr8 (4 HSPs)
chr8 (4-149)||(9936132-9936277)
chr8 (36-148)||(37270078-37270190)
chr8 (36-148)||(42940977-42941089)
chr8 (72-148)||(8273575-8273651)
[»] chr1 (2 HSPs)
chr1 (33-148)||(32774336-32774451)
chr1 (36-142)||(4641000-4641106)
[»] chr5 (2 HSPs)
chr5 (32-142)||(36988772-36988882)
chr5 (74-130)||(40296232-40296288)
[»] chr7 (1 HSPs)
chr7 (4-145)||(42460305-42460445)


Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 13017054 - 13017267
Alignment:
Q  1 accaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaa-cc 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13017054 accaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaagcc 13017153  T
Q  100 aattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaagttatgtaggatcaaggtgtctaaggttgtaatatgactctcatatgatat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||    
T  13017154 aattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaagttatgtaggatc---------aaggttgtaatatgactctcatatgatat 13017244  T
Q  200 acatcaataactacacgtaaagt 222  Q
    ||||||| |||||||||||||||    
T  13017245 acatcaacaactacacgtaaagt 13017267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 142
Target Start/End: Complemental strand, 11272383 - 11272274
Alignment:
Q  33 acttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaa 132  Q
    |||||| |||||||||||||||||||  |||| |||||||||| | | || |||| |||||||| ||||||||| || | ||||||||||||||||||||    
T  11272383 acttcattattccaacattcaaattgcacaaataagttatgtgtaatgataaaatgaatctcaagccaattcaagatacaacgccaaattaaagaggaaa 11272284  T
Q  133 catcacaatg 142  Q
    ||||||||||    
T  11272283 catcacaatg 11272274  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 1479650 - 1479794
Alignment:
Q  4 aaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaatt 103  Q
    ||||||||||| | || |||||||||| | | ||| ||| |||||| ||||||||  ||  ||| ||||| ||||| || ||||||||| ||| ||||||    
T  1479650 aaaaacctttcctttgtcttttagagaccgcctcattataccaacactcaaattgcacatccaaattatgaggagtaataaaattaatcccaagccaatt 1479749  T
Q  104 caaaattccacgccaaattaaagaggaaacatcacaatgcaagaa 148  Q
     |||||     |||||||||||||||| ||||||||||| |||||    
T  1479750 taaaataaggtgccaaattaaagaggagacatcacaatgtaagaa 1479794  T

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Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 1034183 - 1034039
Alignment:
Q  1 accaaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaacca 100  Q
    ||||||||||||||||||| || ||||| | ||| ||| || ||||||||||||||||| |   ||||||||||||||| || || |||| | ||| | |    
T  1034183 accaaaaacctttcttatgtctcttagaaaccacctcattactccaacattcaaattgtacggccaagttatgtggagtaataaagttaaccccaagcta 1034084  T
Q  101 attcaaaattccacgccaaattaaagaggaaacatcacaatgcaa 145  Q
    ||| |||||||||||||||||||| ||||| ||||||||||||||    
T  1034083 atttaaaattccacgccaaattaaggaggagacatcacaatgcaa 1034039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 2921170 - 2921283
Alignment:
Q  35 ttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaaca 134  Q
    ||||| |||||||||  |||| || |||||||||||||| ||||| || || |||||| | | |||||||||||| | |||||| |||||  ||||||||    
T  2921170 ttcaccattccaacaaacaaaatgagcaaacaagttatgaggagtaataaagttaatccctagccaattcaaaatacgacgccagattaagaaggaaaca 2921269  T
Q  135 tcacaatgcaagaa 148  Q
    |||||||| |||||    
T  2921270 tcacaatgtaagaa 2921283  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 9936277 - 9936132
Alignment:
Q  4 aaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaatt 103  Q
    ||||||||||| || ||||| | |||| ||| ||| |||||||||| ||||| || |||||||| ||||| || || || ||||| ||| | | ||||||    
T  9936277 aaaaacctttcctaagccttctcgagaccacctcattattccaacactcaaaatgcgcaaacaaattatgaggggtaataaaattcatcccgagccaatt 9936178  T
Q  104 caaaattccacgccaaattaaagaggaaacatcacaatgcaagaag 149  Q
     ||||| |||||||||||||||||||| ||||||||||||||||||    
T  9936177 taaaataccacgccaaattaaagaggagacatcacaatgcaagaag 9936132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 148
Target Start/End: Original strand, 37270078 - 37270190
Alignment:
Q  36 tcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacat 135  Q
    |||||||||||||| ||||||||  |||||| |||||| |||||||  |||||||| || | ||||||||||| |||||||||||| ||  | || ||||    
T  37270078 tcactattccaacaatcaaattgcacaaacaggttatgcggagttacaaaattaatgtctagccaattcaaaactccacgccaaatcaactaagacacat 37270177  T
Q  136 cacaatgcaagaa 148  Q
    |||||||||||||    
T  37270178 cacaatgcaagaa 37270190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 42941089 - 42940977
Alignment:
Q  36 tcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacat 135  Q
    |||||||||||||| ||||||||  |||||| |||||| |||||||  |||||||| || | ||||||||||| |||||||||||  || || || ||||    
T  42941089 tcactattccaacaatcaaattgcacaaacaggttatgcggagttacaaaattaatgtctagccaattcaaaactccacgccaaagcaacgaagacacat 42940990  T
Q  136 cacaatgcaagaa 148  Q
    |||||||||||||    
T  42940989 cacaatgcaagaa 42940977  T

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Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 148
Target Start/End: Complemental strand, 8273651 - 8273575
Alignment:
Q  72 tgtggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacatcacaatgcaagaa 148  Q
    |||||||| || ||||| |||||||||||||||||||| ||||| |||||||| ||||  |||||| ||||||||||    
T  8273651 tgtggagtaataaaattgatctcaaaccaattcaaaataccacgtcaaattaacgaggtcacatcaaaatgcaagaa 8273575  T

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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 33 - 148
Target Start/End: Original strand, 32774336 - 32774451
Alignment:
Q  33 acttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaa 132  Q
    ||||| ||||||||||| || |||||   |||||||||||||||||| |  ||||||||||||| ||||||||| || |||||||||||||| ||||| |    
T  32774336 acttctctattccaacaatcgaattgcataaacaagttatgtggagtaacaaaattaatctcaagccaattcaatatgccacgccaaattaacgaggata 32774435  T
Q  133 catcacaatgcaagaa 148  Q
    |||||||||| |||||    
T  32774436 catcacaatgtaagaa 32774451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 36 - 142
Target Start/End: Original strand, 4641000 - 4641106
Alignment:
Q  36 tcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaaacat 135  Q
    |||| ||||||||||||||| ||  |||| || ||||| ||||| ||||| |||  ||||| ||||||||| ||| |||| |||||||||||||||||||    
T  4641000 tcaccattccaacattcaaaatgaacaaataaattatgaggagtaatgaagttagactcaagccaattcaagatttcacgtcaaattaaagaggaaacat 4641099  T
Q  136 cacaatg 142  Q
    |||||||    
T  4641100 cacaatg 4641106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 142
Target Start/End: Complemental strand, 36988882 - 36988772
Alignment:
Q  32 cacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagaggaa 131  Q
    |||||||||||||||||| ||||| ||  |||| | |||||||||||| || ||||||||||| |||||||||||||| |  |||||||| |||||||||    
T  36988882 cacttcactattccaacaatcaaaatggacaaaaaggttatgtggagtgataaaattaatctccaaccaattcaaaatccggcgccaaatcaaagaggaa 36988783  T
Q  132 acatcacaatg 142  Q
    | |||||||||    
T  36988782 atatcacaatg 36988772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 40296232 - 40296288
Alignment:
Q  74 tggagttatgaaattaatctcaaaccaattcaaaattccacgccaaattaaagagga 130  Q
    |||||| |||||||||||||||| ||||| ||| | | |||||||||||| ||||||    
T  40296232 tggagtaatgaaattaatctcaagccaatccaagacttcacgccaaattagagagga 40296288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 145
Target Start/End: Original strand, 42460305 - 42460445
Alignment:
Q  4 aaaaacctttcttatgccttttagagagcacttcactattccaacattcaaattgtgcaaacaagttatgtggagttatgaaattaatctcaaaccaatt 103  Q
    ||||||||||| ||  |||| | |||| ||| ||| |||||||||| ||||| || |||||||| ||||| || || || ||||| ||  | | ||||||    
T  42460305 aaaaacctttcctaatccttctcgagaccacctcattattccaacactcaaaatgcgcaaacaaattatgaggggtaataaaattcattccgagccaatt 42460404  T
Q  104 caaaattccacgccaaattaaagaggaaacatcacaatgcaa 145  Q
      |||| |||||||||||||||||||| | ||||||||||||    
T  42460405 -taaataccacgccaaattaaagaggagaaatcacaatgcaa 42460445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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