View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3351_high_37 (Length: 220)

Name: NF3351_high_37
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3351_high_37
NF3351_high_37
[»] chr8 (1 HSPs)
chr8 (30-125)||(21185047-21185143)
[»] chr4 (1 HSPs)
chr4 (85-128)||(6671185-6671228)
[»] chr7 (2 HSPs)
chr7 (86-131)||(31209870-31209915)
chr7 (99-131)||(31206445-31206477)
[»] scaffold0014 (1 HSPs)
scaffold0014 (86-114)||(82909-82937)


Alignment Details
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 21185047 - 21185143
Alignment:
Q  30 atattgattgcttatgcttcgtgattctttta-acagctttgcaattaaacagataataaaatcctcaagattgttgtataattagtcataagaatt 125  Q
    ||||||||||||||||||| |||||| ||||  |||  |||||||||||| |||||||||||||||||||||||||||| || |||||||| |||||    
T  21185047 atattgattgcttatgcttggtgattattttttacatatttgcaattaaatagataataaaatcctcaagattgttgtaaaagtagtcatatgaatt 21185143  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 6671185 - 6671228
Alignment:
Q  85 ataaaatcctcaagattgttgtataattagtcataagaattatc 128  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  6671185 ataaaatcctcaagattgttgtataattagtcgtaagaattatc 6671228  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 131
Target Start/End: Original strand, 31209870 - 31209915
Alignment:
Q  86 taaaatcctcaagattgttgtataattagtcataagaattatctac 131  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||    
T  31209870 taaaatcctcaagattgttgtagaattagtcataagagttatctac 31209915  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 31206445 - 31206477
Alignment:
Q  99 attgttgtataattagtcataagaattatctac 131  Q
    ||||||||| |||||||||||||||||||||||    
T  31206445 attgttgtagaattagtcataagaattatctac 31206477  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 114
Target Start/End: Complemental strand, 82937 - 82909
Alignment:
Q  86 taaaatcctcaagattgttgtataattag 114  Q
    |||||||||||||||||||||||||||||    
T  82937 taaaatcctcaagattgttgtataattag 82909  T

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