View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3351_high_8 (Length: 419)

Name: NF3351_high_8
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3351_high_8
NF3351_high_8
[»] chr3 (3 HSPs)
chr3 (1-395)||(11438684-11439078)
chr3 (28-404)||(11317130-11317506)
chr3 (55-385)||(15461196-15461526)
[»] chr8 (4 HSPs)
chr8 (28-392)||(27504872-27505236)
chr8 (39-404)||(27544313-27544678)
chr8 (37-396)||(27498688-27499047)
chr8 (84-385)||(27496478-27496779)
[»] scaffold0071 (1 HSPs)
scaffold0071 (55-385)||(666-996)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 11438684 - 11439078
Alignment:
Q  1 aatatgtaagaagatgatatttgaattgaatttctcaaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaa 100  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  11438684 aatatgtaacaagatgatatttgaattgaatttctccaaatctaaaaattaaatccatgtttaaccaatttctcttcaattacagtgtttaattgctcaa 11438783  T
Q  101 tcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  11438784 tcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaaaaagctttattttcaacaccaaatgacactttcccagtcttattaac 11438883  T
Q  201 ctccaagttgctaagcttctcaaaactacacaaatttaatatatcatcaactaaacctttgaattcttcttctttggagaatggacaccccaaaaactca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||||  ||||||| ||||| | ||| |||||| ||||||| |||    
T  11438884 ctccaagttgctaagcttctcaaaactacacaaatttaatatatcatcaaccacccctttagattcttcatctttagtgaaaggacactccaaaaattca 11438983  T
Q  301 gcaagctctttcaagtaaaaattaggtttcattttcatttcttcatatttcaaaaacatcaccttctttggcctttccaagcttttcttccaata 395  Q
    ||||||| |||||| | ||||| ||| |||||||||||||||||| || |||||||||| ||||| ||||  |||||||| |||| |||||||||    
T  11438984 gcaagctttttcaaatgaaaatcaggcttcattttcatttcttcaaatctcaaaaacataaccttgtttgatctttccaaactttccttccaata 11439078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 28 - 404
Target Start/End: Original strand, 11317130 - 11317506
Alignment:
Q  28 gaatttctcaaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctc 127  Q
    |||||||| ||||||||||||   ||||||||||| || ||||||||||||   |  ||||||| |||||||| |||||||||||| ||| | ||||  |    
T  11317130 gaatttcttaaaatctaaaaacacaacccatgttttacaaatttctcttcagcgatggtgtttatctgctcaaccatttcagttgtgagatgatttttcc 11317229  T
Q  128 catctccaacttggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaact 227  Q
     ||||||||  |  ||| |||| ||| ||||||||||||| | |  ||   |  |||||||  ||||||| |||||||| ||||| | ||||||||||||    
T  11317230 aatctccaatattaccaagacggaaaaaagctttattttccatattaagaaaacctttcccgatcttattgacctccaaattgctcaacttctcaaaact 11317329  T
Q  228 acacaaatttaatatatcatcaactaaacctttgaattcttcttctttggagaatggacaccccaaaaactcagcaagctctttcaagtaaaaattaggt 327  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  11317330 acacaaatttaatatatcatcaaccacacctttgaattcttcttctttggagaatggacactccaaaaactcagcaagctctttcaaataaaaattaggt 11317429  T
Q  328 ttcattttcatttcttcatatttcaaaaacatcaccttctttggcctttccaagcttttcttccaatataccaatac 404  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11317430 ttcattttcatttcttcatatttcaaaaacatcaccttctctggcctttccaagcttttcttccaatataccaatac 11317506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 55 - 385
Target Start/End: Complemental strand, 15461526 - 15461196
Alignment:
Q  55 ccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaat 154  Q
    ||||||||| |||| || | ||| ||||| || |||||| | |||||||||||| |||  |||||  |||  | ||||||||||| ||||| ||| ||      
T  15461526 ccatgtttacccaaattttgttctattactgtatttaaccgttcaatcatttcaattgagagaagagttttccaatctccaactttgccactacggaaga 15461427  T
Q  155 aagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatttaatatatcatcaactaa 254  Q
    |||||||||||||  | ||| | |  | ||| |||  |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |     
T  15461426 aagctttattttcttccccagacggtaattttccaaacttatttacctccaagttgctcagcttctcaaaactacacaaatttaatatatcatcaaccac 15461327  T
Q  255 acctttgaattcttcttctttggagaatggacaccccaaaaactcagcaagctctttcaagtaaaaattaggtttcattttcatttcttcatatttcaaa 354  Q
     |||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||  ||| ||||||||||||||||||||| |||||    
T  15461326 tcctttagattcttcttctttggagaatggacaccccaaaaactcagcaacctctttcaaataaaaacaaggcttcattttcatttcttcatatctcaaa 15461227  T
Q  355 aacatcaccttctttggcctttccaagcttt 385  Q
    ||||||||||||| | |||||||||||||||    
T  15461226 aacatcaccttctcttgcctttccaagcttt 15461196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 28 - 392
Target Start/End: Complemental strand, 27505236 - 27504872
Alignment:
Q  28 gaatttctcaaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctc 127  Q
    ||||||||||||||||||||| | |||||||||||| | ||||||||||| |  ||  ||||||||||||||| ||||| |||||| ||||| ||||  |    
T  27505236 gaatttctcaaaatctaaaaactcaacccatgtttaccaaatttctcttcgacaactatgtttaactgctcaaccattttagttgtgagaagatttttcc 27505137  T
Q  128 catctccaacttggccacgacgaaaataagct-ttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaac 226  Q
     ||||||||||| |||| |||| ||| ||| | || |||||||   |  | || | ||||||  ||||||| | ||||||||||||||||||||||||||    
T  27505136 aatctccaactttgccaagacggaaa-aagttcttgttttcaatttccgacgaaattttcccgttcttattgatctccaagttgctaagcttctcaaaac 27505038  T
Q  227 tacacaaatttaatatatcatcaactaaacctttgaattcttcttctttggagaatggacaccccaaaaactcagcaagctctttcaagtaaaaattagg 326  Q
    ||||||||| ||||||||||||||| | ||| ||| |||||||||||| ||||||||||||||||||||||| ||||| |||||||||   |||||||||    
T  27505037 tacacaaatgtaatatatcatcaaccacaccattggattcttcttcttcggagaatggacaccccaaaaacttagcaatctctttcaaaacaaaattagg 27504938  T
Q  327 tttcattttcatttcttcatatttcaaaaacatcaccttctttggcctttccaagcttttcttcca 392  Q
    ||||||||||||||||||||||||||||||||| |||||||  || ||||||||||||| ||||||    
T  27504937 tttcattttcatttcttcatatttcaaaaacataaccttctccggtctttccaagctttccttcca 27504872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 39 - 404
Target Start/End: Complemental strand, 27544678 - 27544313
Alignment:
Q  39 aatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaact 138  Q
    |||||||||  | ||||||||| || |||||||   |||| | | |||||| ||||||||||||||||||||||| ||||  ||||  | ||||||||||    
T  27544678 aatctaaaatctcaacccatgtgtagccaatttactttcagtgatagtgttcaactgctcaatcatttcagttgtgagaacatttttgcaatctccaact 27544579  T
Q  139 tggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaattta 238  Q
     ||||  | || ||| |   ||| ||||| | | |||| || | ||| || |||||||| |||||||||||||| || |||||||||||||| | |||||    
T  27544578 cggcctagccggaaaaagtatttgttttccatatcaaaagaaagttttcctgtcttattgacctccaagttgctcagtttctcaaaactacatagattta 27544479  T
Q  239 atatatcatcaactaaacctttgaattcttcttctttggagaatggacaccccaaaaactcagcaagctctttcaagtaaaaattaggtttcattttcat 338  Q
    ||||||||||||| | ||||||| ||||||||||||||||||||||||| |||||||| | ||||| ||||||||| |||||| |||| |||||||||||    
T  27544478 atatatcatcaaccatacctttggattcttcttctttggagaatggacaacccaaaaaattagcaatctctttcaaataaaaactaggattcattttcat 27544379  T
Q  339 ttcttcatatttcaaaaacatcaccttctttggcctttccaagcttttcttccaatataccaatac 404  Q
    |||||||||||||||||||||||||||||  |||||||||||||||| |||||||||| |||||||    
T  27544378 ttcttcatatttcaaaaacatcaccttctccggcctttccaagctttccttccaatatcccaatac 27544313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 37 - 396
Target Start/End: Original strand, 27498688 - 27499047
Alignment:
Q  37 aaaatctaaaaattaaacccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaa 136  Q
    |||||||||||| | |||||||||||| ||||||| | |||  | | ||||||||| |||| ||||||||||| ||| ||||| ||||  | ||||||||    
T  27498688 aaaatctaaaaactcaacccatgtttacccaatttattttcggtgatagtgtttaattgcttaatcatttcagctgtgagaaggtttttccaatctccaa 27498787  T
Q  137 cttggccacgacgaaaataagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatt 236  Q
    ||||||||||||||||| |||||||||||||||||||   ||  ||| |  | ||||| || |||||||||||||| |  ||||||||||||||||||||    
T  27498788 cttggccacgacgaaaaaaagctttattttcaacacctgttgctactcttacggtcttgttgacctccaagttgcttaagttctcaaaactacacaaatt 27498887  T
Q  237 taatatatcatcaactaaacctttgaattcttcttctttggagaatggacaccccaaaaactcagcaagctctttcaagtaaaaattaggtttcattttc 336  Q
    |||||||||||| |  |  || ||| |||||||||| ||  |||||||||| |||| ||||||||||| || |||||| |||||| ||||||||||||||    
T  27498888 taatatatcatcgatcatgcccttggattcttcttcattaaagaatggacaacccagaaactcagcaatctttttcaaataaaaactaggtttcattttc 27498987  T
Q  337 atttcttcatatttcaaaaacatcaccttctttggcctttccaagcttttcttccaatat 396  Q
    ||||||||| |||| | |||||||||||||| ||||||||||||| ||| ||||||||||    
T  27498988 atttcttcaaattttataaacatcaccttctctggcctttccaagttttccttccaatat 27499047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 84 - 385
Target Start/End: Original strand, 27496478 - 27496779
Alignment:
Q  84 agtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaataagctttattttcaacaccaaatgacact 183  Q
    |||||||||| ||||||||||||| ||||| ||||| ||||  | |||||||||||| |||||| | ||| |||||||||||||| ||||| |||| | |    
T  27496478 agtgtttaacagctcaatcatttctgttgtgagaagatttttccaatctccaacttgtccacgatggaaaaaagctttattttcatcaccagatgatatt 27496577  T
Q  184 ttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatttaatatatcatcaactaaacctttgaattcttcttctttggagaatg 283  Q
     | |  |||||||  || ||||||||||  || ||||||||||||||||||||||||| ||||||||| |  || ||| ||||||||||  | || |||     
T  27496578 cttcatgtcttatcgacttccaagttgcccagattctcaaaactacacaaatttaataaatcatcaaccatgccgttggattcttcttcaatagaaaatc 27496677  T
Q  284 gacaccccaaaaactcagcaagctctttcaagtaaaaattaggtttcattttcatttcttcatatttcaaaaacatcaccttctttggcctttccaagct 383  Q
     ||| |||||||||||||||| || |||||| |||||| |||| |||||||||  ||||||||||||||||||||||||||||| |||| ||||||| ||    
T  27496678 cacaacccaaaaactcagcaatctttttcaaataaaaactaggcttcattttcgcttcttcatatttcaaaaacatcaccttctctggcatttccaaact 27496777  T
Q  384 tt 385  Q
    ||    
T  27496778 tt 27496779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 55 - 385
Target Start/End: Original strand, 666 - 996
Alignment:
Q  55 ccatgtttaaccaatttctcttcaattacagtgtttaactgctcaatcatttcagttgttagaagcttttctccatctccaacttggccacgacgaaaat 154  Q
    ||||||||| |||| || | ||| ||||| || |||||| | |||||||||||| |||  |||||  |||  | ||||||||||| ||||| ||| ||      
T  666 ccatgtttacccaaattttgttctattactgtatttaaccgttcaatcatttcaattgagagaagagttttccaatctccaactttgccactacggaaga 765  T
Q  155 aagctttattttcaacaccaaatgacactttcccagtcttattaacctccaagttgctaagcttctcaaaactacacaaatttaatatatcatcaactaa 254  Q
    |||||||||||||  | ||| | |  | ||| |||  |||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |     
T  766 aagctttattttcttccccagacggtaattttccaaacttatttacctccaagttgctcagcttctcaaaactacacaaatttaatatatcatcaaccac 865  T
Q  255 acctttgaattcttcttctttggagaatggacaccccaaaaactcagcaagctctttcaagtaaaaattaggtttcattttcatttcttcatatttcaaa 354  Q
     |||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||  ||| ||||||||||||||||||||| |||||    
T  866 tcctttagattcttcttctttggagaatggacaccccaaaaactcagcaacctctttcaaataaaaacaaggcttcattttcatttcttcatatctcaaa 965  T
Q  355 aacatcaccttctttggcctttccaagcttt 385  Q
    ||||||||||||| | |||||||||||||||    
T  966 aacatcaccttctcttgcctttccaagcttt 996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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