View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3351_low_11 (Length: 412)
Name: NF3351_low_11
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3351_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 9 - 394
Target Start/End: Complemental strand, 52383800 - 52383415
Alignment:
| Q |
9 |
gaagaatatagttgcacaaggaagatcacctttatacacacaagttggtcaaataatgactaatgaggttattttatatgctctctcattttcattctgt |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52383800 |
gaagaaaatagttgcacaaggaagatcacctttatacacacaagttggtcaaataatgactaatgaggttattttatatgctctctcattttcattctgt |
52383701 |
T |
|
| Q |
109 |
ttaatccaatctagcatttacattt-ataacttttaactaatatgattacctataacagaatgaactggtaactgtgacctcggacacgaacattctaag |
207 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
52383700 |
ttaatccaatctagcatttacattttatgacttttaactaatatgattacctataacagaatgacctggtaactgtgacctcggacacgaatattctaag |
52383601 |
T |
|
| Q |
208 |
agcaatgagactaatgttgggtaactgtctgttccacataaatattttgctacagaatttatgtgaccaaatattgaagaaacatagtgtgaccctatac |
307 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
52383600 |
agcaatgagactaatgttaggtaattgtctgttccacataaatattttgctacagaatttatgtgaccaaatattgaagaaacat-gtgtgaccctatac |
52383502 |
T |
|
| Q |
308 |
ttgtattgcagagaatcgaattcgtcatgttccagttatagatggggaaatagttggtatgatttcaattgtagatgtggtgcgagc |
394 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52383501 |
ttgtattgcagagaatcgaatccgtcatgttccagttatagatggggaaatagttggtatgatttcaattgtagatgtggtgcgagc |
52383415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University