View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3351_low_13 (Length: 391)
Name: NF3351_low_13
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3351_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 11 - 375
Target Start/End: Original strand, 45724933 - 45725297
Alignment:
| Q |
11 |
cacagacacacatggaagaaggaaaagaacaacaagttgcaaagnnnnnnntgaataaattccttctgatactaaattgtctgatattagccctaggtaa |
110 |
Q |
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| T |
45724933 |
cacacacacacatggaagaaggaaaagaacaacaagttgcaaagaaaaaaatgaataaattccttctgatagtaaattgtctgatattagccctaggtaa |
45725032 |
T |
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| Q |
111 |
ctccggtggtcccctaataatgcgtctctatttcatccacggcggccaacgtgtctggctctccgcctgcctggaaactgccggtttccccttgatgctc |
210 |
Q |
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| T |
45725033 |
ctccggtggtcccctaataatgcgtctctatttcatccacggcggccaacgtgtctggctctccgcctgcctggaaactgccggtttccccttgatgctc |
45725132 |
T |
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| Q |
211 |
attcccctcacaatctcatacatccaacgtttccgtcaccgccacaaacctttaccatccaacaccatctccatcgcctcagaaaaacaaagtataatct |
310 |
Q |
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| T |
45725133 |
attcccctcacaatctcatacatccaacgtttccgtcaccgccacaaacctttaccatccaacaccatctccatcgcctcagaaaaacaaaatataatct |
45725232 |
T |
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| Q |
311 |
ccatgaaaccacctattttcttcgcagccgcctttgtcggaatcctcaccggtcttgatgattat |
375 |
Q |
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| T |
45725233 |
ccatgaaaccacctattttctttgcagccgcctttgtcggaatcctcaccggtcttgacgattat |
45725297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 69 - 368
Target Start/End: Original strand, 45729180 - 45729479
Alignment:
| Q |
69 |
attccttctgatactaaattgtctgatattagccctaggtaactccggtggtcccctaataatgcgtctctatttcatccacggcggccaacgtgtctgg |
168 |
Q |
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| T |
45729180 |
attccttctcgtagtaaattgtctcatattatccctaggtacctgcagtgctcccctcataatgcgtctctatttcatccacggcggccaacgtgtctgg |
45729279 |
T |
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| Q |
169 |
ctctccgcctgcctggaaactgccggtttccccttgatgctcattcccctcacaatctcatacatccaacgtttccgtcaccgccacaaacctttaccat |
268 |
Q |
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| T |
45729280 |
ctctccgccttcctccaaaccgccggtttccccttgatgctcattcccctcgcaatctcatacatcaaacgccaccgtctccaccaccatcctccaccat |
45729379 |
T |
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| Q |
269 |
ccaacaccatctccatcgcctcagaaaaacaaagtataatctccatgaaaccacctattttcttcgcagccgcctttgtcggaatcctcaccggtcttga |
368 |
Q |
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| T |
45729380 |
tgacaaccatctccatcgccccagaaaaactaaatataatctccatgaaacctcctattttcttcgcagctgccttcatcggaatcctcaccggccttga |
45729479 |
T |
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