View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3351_low_18 (Length: 353)
Name: NF3351_low_18
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3351_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 29423017 - 29423360
Alignment:
| Q |
1 |
atgcctaacgttccaagtttggattggagaccggtgaagcgaccaagaactaattggtgtttacacagttgatgtaacatatttacactattagttactg |
100 |
Q |
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| T |
29423017 |
atgcctaacgttccaagtttggattggagaccggtgaagcgaccaagaactaattggtgtttacacagttgctgtaacatattttcactattagttattg |
29423116 |
T |
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| Q |
101 |
atttcatgatatacctttaatgatgaatggtaatgcaagtgataaaagaccaaagctaaaacagaaagtactttatgaccatacccaagacaatacctct |
200 |
Q |
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| T |
29423117 |
atttcatgatatacctttaatgatgaatggtaatgcaagtgataaaagaccaaagctaaaacagaaagtactttatgaccatacccaagataatacctct |
29423216 |
T |
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| Q |
201 |
ccccctcctctctctcttcataatttatccatgttactgttttgtgtagtagaaaaaatatttttcttagaaatttattgattaattaggcaatatttgt |
300 |
Q |
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| T |
29423217 |
caccctcctctctctcttcataatttatccatgttactgtttagtgtagtagaaaaaatatttttcttagaaatttattgattaattaggcaatatttgt |
29423316 |
T |
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| Q |
301 |
actactaaccgaaactttataccccatacgtacttaattcttctc |
345 |
Q |
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| T |
29423317 |
actatgaaccaaaactttata-cccatacgtactgaattcttctc |
29423360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 13574285 - 13574225
Alignment:
| Q |
245 |
tgtagtagaaaaaatatttttcttagaaatttattgattaattaggcaatatttgtactac |
305 |
Q |
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| T |
13574285 |
tgtagtagaaaaaatgtttttcttaaaaatttattaattaatttggtaatataagtactac |
13574225 |
T |
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