View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3351_low_22 (Length: 345)

Name: NF3351_low_22
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3351_low_22
NF3351_low_22
[»] chr6 (9 HSPs)
chr6 (159-326)||(13475630-13475795)
chr6 (87-171)||(14044769-14044853)
chr6 (159-316)||(14020336-14020480)
chr6 (209-326)||(14108519-14108636)
chr6 (78-157)||(14020524-14020607)
chr6 (12-71)||(14020649-14020708)
chr6 (1-38)||(14044861-14044898)
chr6 (83-113)||(13475564-13475594)
chr6 (142-171)||(14044691-14044720)
[»] chr8 (3 HSPs)
chr8 (201-258)||(10507846-10507903)
chr8 (83-135)||(10507760-10507812)
chr8 (201-248)||(8753612-8753659)
[»] chr5 (1 HSPs)
chr5 (281-319)||(40816207-40816245)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 5e-50; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 159 - 326
Target Start/End: Original strand, 13475630 - 13475795
Alignment:
Q  159 aaaaatttatctacgtttctttcaccaaaaagcttaagataattagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa 258  Q
    ||||| |||| || |||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||  ||||||||| ||||||| |||||||||    
T  13475630 aaaaagttatatatgtttctttcacctaaaagcttaagatagttagtttataacaattgacaatactgata--gagttacagcagagtaattgcagagaa 13475727  T
Q  259 atacgagaatgataagcataaggaaaattacactcacctcccataagttctattaaaatgacacagac 326  Q
    |||||||||||||| | ||||| ||||||||||||||||||| || ||||||||||||| ||||||||    
T  13475728 atacgagaatgataggaataagtaaaattacactcacctcccgtatgttctattaaaattacacagac 13475795  T

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Target: chr6; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 14044853 - 14044769
Alignment:
Q  87 aaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta 171  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14044853 aaatgtatttgtctaacgaaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta 14044769  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 159 - 316
Target Start/End: Complemental strand, 14020480 - 14020336
Alignment:
Q  159 aaaaatttatctacgtttctttcaccaaaaagcttaagataattagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa 258  Q
    ||||||| || || ||||||||||||||||||| ||||||| ||||| | ||| |||||||||||||||||  |||||||||           |||||||    
T  14020480 aaaaattaatttatgtttctttcaccaaaaagcctaagatagttagtatttgataattgacaatactgata--gagttacag-----------cagagaa 14020394  T
Q  259 atacgagaatgataagcataaggaaaattacactcacctcccataagttctattaaaa 316  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  14020393 atacgagaatgataagaataaggaaaattacactcacctcccataagttctattaaaa 14020336  T

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Target: chr6; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 209 - 326
Target Start/End: Complemental strand, 14108636 - 14108519
Alignment:
Q  209 tgacaattgacaatactgatatagagttacagtagagtaaatgcagagaaatacgagaatgataagcataaggaaaattacactcacctcccataagttc 308  Q
    |||||||||||||||  || |||||||||||| ||||||| | ||||||||||||| ||||||| | |||| ||||||||||||||||||||||||||||    
T  14108636 tgacaattgacaatatcgacatagagttacagcagagtaatttcagagaaatacgaaaatgataggaataatgaaaattacactcacctcccataagttc 14108537  T
Q  309 tattaaaatgacacagac 326  Q
    |||||||| || ||||||    
T  14108536 tattaaaaggatacagac 14108519  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 14020607 - 14020524
Alignment:
Q  78 gagctcaaaaaatgtatttgtctaacggaatttcagcacatgactgctgg----aattaaaatgtatttatgttcacatttcaa 157  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||    ||||||||||||||||||||||||||||||    
T  14020607 gagctcaaaaaatgtatttgtctaacggaatttcagcacatgaccggtggaattaattaaaatgtatttatgttcacatttcaa 14020524  T

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Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 71
Target Start/End: Complemental strand, 14020708 - 14020649
Alignment:
Q  12 tgttccagctagttctccatcatccgtgttctaaaagaacacttagttcagttgtcatat 71  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||| || ||||||    
T  14020708 tgttccagctagttctccatcatccgtaacctaaaagaacacttagttcatttctcatat 14020649  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 14044898 - 14044861
Alignment:
Q  1 ccattcagttatgttccagctagttctccatcatccgt 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14044898 ccattcagttatgttccagctagttctccatcatccgt 14044861  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 113
Target Start/End: Original strand, 13475564 - 13475594
Alignment:
Q  83 caaaaaatgtatttgtctaacggaatttcag 113  Q
    |||||||||||||||||||||||||||||||    
T  13475564 caaaaaatgtatttgtctaacggaatttcag 13475594  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 14044720 - 14044691
Alignment:
Q  142 tatgttcacatttcaataaaaatttatcta 171  Q
    ||||||||||||||||||||||||||||||    
T  14044720 tatgttcacatttcaataaaaatttatcta 14044691  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 10507846 - 10507903
Alignment:
Q  201 ttagtttatgacaattgacaatactgatatagagttacagtagagtaaatgcagagaa 258  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||    
T  10507846 ttagtttatgacaattgacaatactgatatagacttacagcagagtaattgcagagaa 10507903  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 83 - 135
Target Start/End: Original strand, 10507760 - 10507812
Alignment:
Q  83 caaaaaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaa 135  Q
    ||||||||||||||||||| | ||||||||||||||||| | |||||||||||    
T  10507760 caaaaaatgtatttgtctatctgaatttcagcacatgacaggtggaattaaaa 10507812  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 8753659 - 8753612
Alignment:
Q  201 ttagtttatgacaattgacaatactgatatagagttacagtagagtaa 248  Q
    |||||||||||||||||||| || ||||||||| |||||| |||||||    
T  8753659 ttagtttatgacaattgacattagtgatatagacttacagcagagtaa 8753612  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 319
Target Start/End: Original strand, 40816207 - 40816245
Alignment:
Q  281 gaaaattacactcacctcccataagttctattaaaatga 319  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  40816207 gaaaattgcactcacctcccctaagttctattaaaatga 40816245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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