View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3351_low_28 (Length: 273)
Name: NF3351_low_28
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3351_low_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 32 - 263
Target Start/End: Original strand, 7382197 - 7382428
Alignment:
| Q |
32 |
aagtggatttttctgaaa-tttagtcatggttcaatcatgactaaaaataaaaatttgaggaaaactttcctaaatccagttttattaacattttggaaa |
130 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7382197 |
aagtggatttttctgaaaatttagtcatggttcaactatgactaaaaataaaaatttgaggaaaactttcctaaatccagttttattaacattttggaaa |
7382296 |
T |
|
| Q |
131 |
acnnnnnnnaaaccattcggtttatacacgtgcgttagttagatatacatttgaagtagaaatttgactaaaatggctaacttattgtaacatttgtaac |
230 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
7382297 |
acttttttaaaac-attcggtttatacacgtgcgttagttagatatacatttgaagtagaaatttgaccaaaatggctaagttattgtaacatttgtaac |
7382395 |
T |
|
| Q |
231 |
gtaatagaccaatttatttatttttattatatt |
263 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
7382396 |
gtaatagaccaatttatttatttttattatatt |
7382428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 43532053 - 43532009
Alignment:
| Q |
188 |
agaaatttgactaaaatggctaacttattgtaacatttgtaacgt |
232 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
43532053 |
agaaatttgactaaaatgactaacttattgtaacgtttgtaacgt |
43532009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University