View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3351_low_29 (Length: 262)

Name: NF3351_low_29
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3351_low_29
NF3351_low_29
[»] chr7 (5 HSPs)
chr7 (34-154)||(16968862-16968982)
chr7 (68-154)||(16978136-16978222)
chr7 (13-49)||(16968817-16968853)
chr7 (56-113)||(10601589-10601646)
chr7 (13-45)||(16824394-16824426)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 154
Target Start/End: Original strand, 16968862 - 16968982
Alignment:
Q  34 tcactttcatcagaactatcaccatcactatcatcagaatcacccaaatcaacaaagtttttatctttatcatcaaactcttcgtttcctccaatttcat 133  Q
    |||||||||||||||  ||||| |||||| | |||||||||||||||||||| |||| ||||||||||||||| ||||||  |||| ||||||| |||||    
T  16968862 tcactttcatcagaatcatcactatcactcttatcagaatcacccaaatcaataaagcttttatctttatcataaaactcaccgttccctccaacttcat 16968961  T
Q  134 cactctttactccgtctttaa 154  Q
    |||||||||||||||||||||    
T  16968962 cactctttactccgtctttaa 16968982  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 154
Target Start/End: Original strand, 16978136 - 16978222
Alignment:
Q  68 cagaatcacccaaatcaacaaagtttttatctttatcatcaaactcttcgtttcctccaatttcatcactctttactccgtctttaa 154  Q
    |||||||| |||||||||||||||||||||||||||||||||||||  | ||||||  | |||||||| |||||||| | |||||||    
T  16978136 cagaatcatccaaatcaacaaagtttttatctttatcatcaaactcaccatttcctttactttcatcagtctttacttcctctttaa 16978222  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 16968817 - 16968853
Alignment:
Q  13 tcatcactggtctcattttcttcactttcatcagaac 49  Q
    |||||||||||||||||||||||||||||||| ||||    
T  16968817 tcatcactggtctcattttcttcactttcatctgaac 16968853  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 113
Target Start/End: Complemental strand, 10601646 - 10601589
Alignment:
Q  56 catcactatcatcagaatcacccaaatcaacaaagtttttatctttatcatcaaactc 113  Q
    ||||||| |||||||||||| |||||||||||||    |||||||||||| |||||||    
T  10601646 catcactctcatcagaatcatccaaatcaacaaaaaaattatctttatcagcaaactc 10601589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 16824394 - 16824426
Alignment:
Q  13 tcatcactggtctcattttcttcactttcatca 45  Q
    |||||||| ||||||||||||||||||||||||    
T  16824394 tcatcactagtctcattttcttcactttcatca 16824426  T

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