View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3351_low_30 (Length: 255)
Name: NF3351_low_30
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3351_low_30 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 15628754 - 15628521
Alignment:
| Q |
17 |
agttttactattgttcaattttgtgccagttttatcgcaagttaatcagttcttgtatgcaggattcaaggatgttggtcccaacaatctaaccttgaat |
116 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
15628754 |
agttttactattgttcaattttgtgtcagttttatcccaagttaaccagttcttgtatgcaggattcaaggatgttggtcccaacaatcttaccttgaat |
15628655 |
T |
|
| Q |
117 |
ggatttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggccatgctttttacacattaccttttcagctaagga |
216 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15628654 |
ggttttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggccatgctttttactcattaccttttcagctaagga |
15628555 |
T |
|
| Q |
217 |
actcgacaactcgtaaagcttactcatattcttc |
250 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |
|
|
| T |
15628554 |
actcgacaactcgtaaagcttactcattttcttc |
15628521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 22932985 - 22933138
Alignment:
| Q |
84 |
aaggatgttggtcccaacaatctaaccttgaatggatttgcagagatagagaaaaatgggatgataagattaacaaatcacacaaacaatgaaatgggcc |
183 |
Q |
| |
|
||||||| |||| ||| |||| ||||||| || || ||||| |||||||||||||||| || ||||||||||||||| | ||| ||| |||||||| |
|
|
| T |
22932985 |
aaggatggtggtgccagcaatttaaccttaaacggtgttgcaaagatagagaaaaatggaataataagattaacaaatgattcaagcaaattaatgggcc |
22933084 |
T |
|
| Q |
184 |
atgctttttacacattaccttttcagctaaggaactcgacaactcgtaaagctt |
237 |
Q |
| |
|
||||||||||| | |||||||||||||| |||||| |||||| ||||||||| |
|
|
| T |
22933085 |
atgctttttactctcaaccttttcagctaaagaactcaacaactggtaaagctt |
22933138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 161
Target Start/End: Complemental strand, 22922603 - 22922526
Alignment:
| Q |
84 |
aaggatgttggtcccaacaatctaaccttgaatggatttgcagagatagagaaaaatgggatgataagattaacaaat |
161 |
Q |
| |
|
|||||||||||||| || || |||||||| ||||| | ||||||||||| |||||||| || ||||||||||||||| |
|
|
| T |
22922603 |
aaggatgttggtccaaaaaacctaaccttaaatggtatagcagagatagaaaaaaatggtataataagattaacaaat |
22922526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 24382736 - 24382698
Alignment:
| Q |
123 |
gcagagatagagaaaaatgggatgataagattaacaaat |
161 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| |
|
|
| T |
24382736 |
gcagagatagagaaaaatggtataataagattaacaaat |
24382698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 161
Target Start/End: Original strand, 36386045 - 36386081
Alignment:
| Q |
125 |
agagatagagaaaaatgggatgataagattaacaaat |
161 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||| |
|
|
| T |
36386045 |
agagatagagaaaaatggtataataagattaacaaat |
36386081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University