View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3351_low_41 (Length: 225)

Name: NF3351_low_41
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3351_low_41
NF3351_low_41
[»] chr7 (11 HSPs)
chr7 (1-225)||(32726983-32727207)
chr7 (6-169)||(35938799-35938962)
chr7 (14-166)||(35981485-35981637)
chr7 (14-166)||(36002897-36003049)
chr7 (3-175)||(36218044-36218216)
chr7 (6-183)||(36222038-36222215)
chr7 (3-170)||(35957460-35957627)
chr7 (45-170)||(35976915-35977040)
chr7 (45-170)||(35998327-35998452)
chr7 (3-164)||(35946258-35946419)
chr7 (15-125)||(35951936-35952046)
[»] chr1 (2 HSPs)
chr1 (1-167)||(18125183-18125349)
chr1 (6-177)||(18117520-18117691)
[»] chr2 (1 HSPs)
chr2 (3-170)||(26329077-26329244)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 32727207 - 32726983
Alignment:
Q  1 tattctcaaaatatgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32727207 tattctcaaaatatgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagtt 32727108  T
Q  101 aagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattatgccttctctattgataatatttgtagtctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  32727107 aagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattatgccttctctagtgataatatttgtagtctt 32727008  T
Q  201 tggatggctcttggaattgtacaat 225  Q
    ||||||||| |||||||||||||||    
T  32727007 tggatggcttttggaattgtacaat 32726983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 6 - 169
Target Start/End: Complemental strand, 35938962 - 35938799
Alignment:
Q  6 tcaaaatatgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagct 105  Q
    ||||||| ||||||||||||||||  |||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||| | || |||||||    
T  35938962 tcaaaatttgatttaaataagtgggaatttgtaagagattctgagatatggaatttagaacagaagcaaaatgatattttacctgcactaaaattaagct 35938863  T
Q  106 atgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagatta 169  Q
    ||||||||||||||||||| |||||||| ||||||||||  |||||||| ||||||||||||||    
T  35938862 atgatcaaatgccatcctacttgaggcactgttttgcttatttttccctatatcccaaagatta 35938799  T

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Target: chr7; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 35981637 - 35981485
Alignment:
Q  14 tgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaa 113  Q
    |||||||||||||||| ||||||| || ||||||||| |||||||| |||| ||||||||||||||||||||||||||  |||||||||| |||||||||    
T  35981637 tgatttaaataagtgggtatttgtaagggattctgagttatggaatctagagcagaagaaagatgatattttacctgccctgaagttaagttatgatcaa 35981538  T
Q  114 atgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaaga 166  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||||||||    
T  35981537 atgccatcctatttgaggcagtgttttgcttacttttccctctatcccaaaga 35981485  T

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Target: chr7; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 166
Target Start/End: Complemental strand, 36003049 - 36002897
Alignment:
Q  14 tgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaa 113  Q
    |||||||||||||||| ||||||| || ||||||||| |||||||| |||| ||||||||||||||||||||||||||  |||||||||| |||||||||    
T  36003049 tgatttaaataagtgggtatttgtaagggattctgagttatggaatctagagcagaagaaagatgatattttacctgccctgaagttaagttatgatcaa 36002950  T
Q  114 atgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaaga 166  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||||||||    
T  36002949 atgccatcctatttgaggcagtgttttgcttacttttccctctatcccaaaga 36002897  T

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Target: chr7; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 3 - 175
Target Start/End: Original strand, 36218044 - 36218216
Alignment:
Q  3 ttctcaaaatatgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaa 102  Q
    |||||||||| ||||||| |||||||| ||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||| || || ||||    
T  36218044 ttctcaaaatttgatttagataagtggttatttgtaagagaccatgagatatggaatttagaacagaagaaagatgatattttacctgctttaaaattaa 36218143  T
Q  103 gctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattatgcctt 175  Q
    ||||||||||||||||||| ||| |||| |||||||||||||  |||||| | ||||||||||| ||| ||||    
T  36218144 gctatgatcaaatgccatcatatctgagacaatgttttgcttgtttttccttgtatcccaaagactatacctt 36218216  T

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Target: chr7; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 36222038 - 36222215
Alignment:
Q  6 tcaaaatatgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagct 105  Q
    ||||||| ||||||||||||||||||||| || |||||   |||||| ||||| |||||||| ||||||| |||||||||||||||||| || |||||||    
T  36222038 tcaaaatttgatttaaataagtggatattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagct 36222137  T
Q  106 atgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattatgccttctctattg 183  Q
    ||||| |||||||||||||||||||||| ||||||||||  |||||| | ||||||||||||||| | || |||||||    
T  36222138 atgatgaaatgccatcctatttgaggcattgttttgcttatttttccttgtatcccaaagattattcattttctattg 36222215  T

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Target: chr7; HSP #7
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 3 - 170
Target Start/End: Complemental strand, 35957627 - 35957460
Alignment:
Q  3 ttctcaaaatatgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaa 102  Q
    |||||||| | |||| ||| |||||||  |||||| || || |||||||| |||||||||||||| ||||   ||||||||||||||||  | || ||||    
T  35957627 ttctcaaactttgatataagtaagtgggaatttgttagggactctgagatgtggaatttagaacaaaagattaatgatattttacctgcgctaaaattaa 35957528  T
Q  103 gctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattat 170  Q
    | ||||||||||||||||| ||| |||| |||||||||||||  ||||||||||||||||||||||||    
T  35957527 gttatgatcaaatgccatcatatctgagacaatgttttgcttatttttccctttatcccaaagattat 35957460  T

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Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 35977040 - 35976915
Alignment:
Q  45 tctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctt 144  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||||  | || ||||||||||||||||||||||| ||| |||| |||||||||| ||    
T  35977040 tctgagatgtggaatttagaacaaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgttt 35976941  T
Q  145 tcttttccctttatcccaaagattat 170  Q
       |||||||||||||||||||||||    
T  35976940 atatttccctttatcccaaagattat 35976915  T

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Target: chr7; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 170
Target Start/End: Complemental strand, 35998452 - 35998327
Alignment:
Q  45 tctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaatgccatcctatttgaggcaatgttttgctt 144  Q
    |||||||| |||||||||||||| |||||||||| ||||||||||||  | || ||||||||||||||||||||||| ||| |||| |||||||||| ||    
T  35998452 tctgagatgtggaatttagaacaaaagaaagatggtattttacctgcgctaaaattaagctatgatcaaatgccatcatatatgagacaatgttttgttt 35998353  T
Q  145 tcttttccctttatcccaaagattat 170  Q
       |||||||||||||||||||||||    
T  35998352 atatttccctttatcccaaagattat 35998327  T

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Target: chr7; HSP #10
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 3 - 164
Target Start/End: Complemental strand, 35946419 - 35946258
Alignment:
Q  3 ttctcaaaatatgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaa 102  Q
    |||||||| | |||| ||| |||||||  ||| || || || |||||||| |||||||||||||| |||||||||||||| ||||||||  | || ||||    
T  35946419 ttctcaaactttgatataagtaagtgggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatgatatcttacctgcgctaaaattaa 35946320  T
Q  103 gctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaa 164  Q
    | ||||||||||||||||| ||| | || |||||||||||||  ||||| |||| |||||||    
T  35946319 gttatgatcaaatgccatcatatctaagacaatgttttgcttatttttctctttttcccaaa 35946258  T

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Target: chr7; HSP #11
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 15 - 125
Target Start/End: Complemental strand, 35952046 - 35951936
Alignment:
Q  15 gatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagctatgatcaaa 114  Q
    ||||||| |||||||  |||||| ||||| ||||  || ||||||||||||||  ||||||||||||||||||||||  |||| ||||||||||||||||    
T  35952046 gatttaagtaagtgggaatttgtcagagactctgctatttggaatttagaacaacagaaagatgatattttacctgccctgaaattaagctatgatcaaa 35951947  T
Q  115 tgccatcctat 125  Q
    || ||||||||    
T  35951946 tgtcatcctat 35951936  T

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Target: chr1 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 18125349 - 18125183
Alignment:
Q  1 tattctcaaaatatgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagtt 100  Q
    |||||||||||| |||||||||||  ||||||||||| |||||||||||| | ||||||||| ||||| | ||||||||||||||||||||| | || ||    
T  18125349 tattctcaaaatttgatttaaatacatggatatttgtaagagattctgagctgtggaatttaaaacagcaaaaagatgatattttacctgcactaaaatt 18125250  T
Q  101 aagctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagat 167  Q
     |||||||| ||||||||||||||||| |||||||| |||||||  || ||||||||||| ||||||    
T  18125249 gagctatgaccaaatgccatcctatttaaggcaatgctttgcttatttctccctttatcctaaagat 18125183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 6 - 177
Target Start/End: Complemental strand, 18117691 - 18117520
Alignment:
Q  6 tcaaaatatgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaagct 105  Q
    ||||||| |||||||||||| |||  | |||  ||||| |||||||| |||| ||||||||| ||| || ||||||||||||||||| | || |||||||    
T  18117691 tcaaaatttgatttaaataaatgggaacttgcaagagactctgagatgtggactttagaacaaaagcaaaatgatattttacctgcactaaaattaagct 18117592  T
Q  106 atgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattatgccttct 177  Q
    ||||| |||||||||||||||| ||||| || ||||||| | || |  | |||||||||||| || ||||||    
T  18117591 atgataaaatgccatcctatttaaggcactgctttgcttacattgctatgtatcccaaagatcataccttct 18117520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 170
Target Start/End: Original strand, 26329077 - 26329244
Alignment:
Q  3 ttctcaaaatatgatttaaataagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatgatattttacctgcattgaagttaa 102  Q
    |||||||||| ||||||| |||||||||  || || || || ||  | ||||||||||||   || || |||||||||||||||||||   | |||||||    
T  26329077 ttctcaaaatttgatttagataagtggaagttcgtcagggactcccaaatatggaatttaaggcaaaacaaagatgatattttacctgtgcttaagttaa 26329176  T
Q  103 gctatgatcaaatgccatcctatttgaggcaatgttttgctttcttttccctttatcccaaagattat 170  Q
    |||||||||||||||||||||||||||| || ||||||||||  |||||||||| |||||||||||||    
T  26329177 gctatgatcaaatgccatcctatttgagacattgttttgcttatttttccctttttcccaaagattat 26329244  T

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