View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3351_low_6 (Length: 483)
Name: NF3351_low_6
Description: NF3351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3351_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 43015472 - 43014997
Alignment:
| Q |
1 |
aacaacagcagacatttcatctctatgaatctgagtaacgatttccgtagaagaagaacttccacttccactatctcttcttccattgatattataatta |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015472 |
aacaacagcagacatttcatctctatgaatctgagtaacaatttccttagaagaagaacttccacttccactatctcttcttccattgatattataatta |
43015373 |
T |
|
| Q |
101 |
ggttctccaccacttccttcaccggttgttgttgttgcactaattattctttgattattatcagaccaattacactgtcttggctgtgtctgataaaata |
200 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015372 |
ggttctccaccacttccttcaccagttgttgttgttgcactaattattctttgattattatcagaccaattacactgtcttggctgtgtctgataaaata |
43015273 |
T |
|
| Q |
201 |
tctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttcc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015272 |
tctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttcc |
43015173 |
T |
|
| Q |
301 |
aaagttggtgtagagaacaagaattttcttgcaacctttttgtttaccattaaccataacaggtctggtcttaccagttttgtgccatcttgtttctcct |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015172 |
gaagttggtgtagagaacaagaattttcttgcaacctttttgtttaccattaaccataacaggtctggtcttaccagttttgtgccatcttgtttctcct |
43015073 |
T |
|
| Q |
401 |
cctgtacttccttgtaagtcacactcttcggtttgaatctttctcctctttcgtgttcctgttgtatatgcctttg |
476 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43015072 |
cctgtacttccttgtaagtcacactcttcggtttgaatctttctcctctttcgtgttcctgttgtatatgcctttg |
43014997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 201 - 396
Target Start/End: Original strand, 28948724 - 28948919
Alignment:
| Q |
201 |
tctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttcc |
300 |
Q |
| |
|
||||||||||||| | || || |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || || | | |||| |
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| T |
28948724 |
tctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcaggcttcttttgccttcc |
28948823 |
T |
|
| Q |
301 |
aaagttggtgtagagaacaagaattttcttgcaacctttttgtttaccattaaccataacaggtctggtcttaccagttttgtgccatcttgtttc |
396 |
Q |
| |
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| ||||||||||||| || || || |||||| ||||||| ||||| || ||||| ||||| || || || |||||||||||||||||||| |
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| T |
28948824 |
atagttggtgtagaggactagtatcttcttgaaacctttcataacaccatcaataataactggtctagttttccctgttttgtgccatcttgtttc |
28948919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 176 - 315
Target Start/End: Complemental strand, 4235893 - 4235754
Alignment:
| Q |
176 |
tgtcttggctgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcg |
275 |
Q |
| |
|
||||| ||||||||||| || || ||||||||| |||| | ||||| ||| | |||||||||| ||||||||||||||||||||||||||||| | |
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|
| T |
4235893 |
tgtctaggctgtgtctggtagaagatctttgaagcaacgaattctccatctctttcttcttcattcataccaagatggtattgatgcatcacccaattag |
4235794 |
T |
|
| Q |
276 |
tcttctcgggttttcgattctttccaa-agttggtgtagag |
315 |
Q |
| |
|
||||||| ||||||| | ||||| ||| ||||||||||||| |
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| T |
4235793 |
tcttctctggttttcca-tctttgcaatagttggtgtagag |
4235754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 221 - 330
Target Start/End: Complemental strand, 38887137 - 38887028
Alignment:
| Q |
221 |
ccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccaaagttggtgtagagaacaa |
320 |
Q |
| |
|
||||||||||| ||||||| | ||||||||||||||| ||||| |||||||| || ||||| || |||| | ||||| |||| ||||| || |||| |
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| T |
38887137 |
ccttctttctcctcttcattgtttccaagatggtattggtgcataacccaatttgttttctctggctttctttgctttctgtagttagtgtaaagcacaa |
38887038 |
T |
|
| Q |
321 |
gaattttctt |
330 |
Q |
| |
|
|||||||||| |
|
|
| T |
38887037 |
gaattttctt |
38887028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 340
Target Start/End: Complemental strand, 30505981 - 30505860
Alignment:
| Q |
219 |
ctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgggttttcgattctttccaaagttggtgtagagaac |
318 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||||||||||||||| || ||||| || |||| | |||||| |||| ||||| || || |
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| T |
30505981 |
ctccttctttctcttcttcatcactcccaagatgatactgatgcatcacccaatttgttttctctggctttctttgttttccatagtttgtgtaaagtac |
30505882 |
T |
|
| Q |
319 |
aagaattttcttgcaacctttt |
340 |
Q |
| |
|
||||||||| ||| |||||||| |
|
|
| T |
30505881 |
aagaatttttttgtaacctttt |
30505860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 339
Target Start/End: Original strand, 34829853 - 34830007
Alignment:
| Q |
185 |
tgtgtctgataaaatatctttgaaacaacaagctctccttctttctcttcttcatgttgtccaagatggtattgatgcatcacccaattcgtcttctcgg |
284 |
Q |
| |
|
||||| || ||||| | |||||||||||| | || || |||||||||||||||| ||||| ||||||||||||||||||||||| |||||||| | |
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|
| T |
34829853 |
tgtgtttggtaaaacacctttgaaacaactaattcaccatctttctcttcttcattactaccaaggtggtattgatgcatcacccaattggtcttctcag |
34829952 |
T |
|
| Q |
285 |
gttttcgattctttccaaagttggtgtagagaacaagaattttcttgcaaccttt |
339 |
Q |
| |
|
| || | | ||||| ||||||||||||| || || || |||||| ||||||| |
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|
| T |
34829953 |
gcttcttttgccttccatagttggtgtagaggactagtatcttcttgaaaccttt |
34830007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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