View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352-Insertion-1 (Length: 451)
Name: NF3352-Insertion-1
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352-Insertion-1 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 5 - 451
Target Start/End: Complemental strand, 3233168 - 3232722
Alignment:
| Q |
5 |
acattaggatctattgagttaaatacataaggatctgctacaggagggatatttagtaaagaagagacacaagaatcccaaactttccaactcctttcca |
104 |
Q |
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| T |
3233168 |
acattaggatctattgagttaaatacataaggatctgctacaggagggatatttagtaaagaagagacacaagaatcccaaactttccaactcctttcca |
3233069 |
T |
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| Q |
105 |
aaattgaagnnnnnnncttcttgaaattttctgatgccaaaatatattttgtcatgtcgtcatgacattgttttcccacctcattcacaaggttaaaaca |
204 |
Q |
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| T |
3233068 |
aaattgaagtttttttcttcttgaaattttctgatgcaaaaatatattttgtcatgtcgtcatgacattgttttcccacctcattcacaaggttaaaaca |
3232969 |
T |
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| Q |
205 |
acattcattaccagctgtttgattaccaaaaaatatactaaagaaaatttcatcaccacatggttggtataactttgttgcacaattttttaagtgtttt |
304 |
Q |
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| T |
3232968 |
acattcattaccagctgtttgattaccgaaaaatatactaaagaatatttcatcaccacatggttggtataactttgttgcacaattttttaagtgtttt |
3232869 |
T |
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| Q |
305 |
tcaaaccatgatgactgggttggtgcatgaggagggggatcatttgatagttgaacatgagatgaaattccggtttgaactaacaaagcacaataagcta |
404 |
Q |
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| T |
3232868 |
tcaaaccatgatgactgggttggtgcatgaggagggggatcatttgatagttgaacatgagatgaaattccggtttgaactaacaaagcacaataagcta |
3232769 |
T |
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| Q |
405 |
ttactattggtaataaactaaaggtgttgaatgtagccatgggttga |
451 |
Q |
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| T |
3232768 |
ttactattggtaataaactaaaggtgttgaatgttgccatgggttga |
3232722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 54 - 446
Target Start/End: Complemental strand, 3235704 - 3235312
Alignment:
| Q |
54 |
tatttagtaaagaagagacacaagaatcccaaactttccaactcctttccaaaattgaagnnnnnnncttcttgaaattttctgatgccaaaatatattt |
153 |
Q |
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| T |
3235704 |
tatttagtaaagaagagacacaagaatcccaaacttttgcactccttttcaatattgaagttttgctcttcctaaaatcttctgatgtcaaaatagcttt |
3235605 |
T |
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| Q |
154 |
tgtcatgtcgtcatgacattgttttcccacctcattcacaaggttaaaacaacattcattaccagctgtttgattaccaaaaaatatactaaagaaaatt |
253 |
Q |
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| T |
3235604 |
tgtcatgtcatcatgacattgttttcccacttcattcacaaggttaaaacaacattccttaccaactgtttgattcccaaaatttatactaaagaaaatc |
3235505 |
T |
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| Q |
254 |
tcatcaccacatggttggtataactttgttgcacaattttttaagtgtttttcaaaccatgatgactgggttggtgcatgaggagggggatcatttgata |
353 |
Q |
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| T |
3235504 |
tcatcaccacatggttggtatacctttgtagcacaattttttaaatgcttttcaaacaatgatggctgggttgatgcatcaagagggggttcatttgata |
3235405 |
T |
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| Q |
354 |
gttgaacatgagatgaaattccggtttgaactaacaaagcacaataagctattactattggtaataaactaaaggtgttgaatgtagccatgg |
446 |
Q |
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| T |
3235404 |
cttgagcatgagatgaaattccagtttcaactaacaaagcaaaataagttaatactattggtaataaactaaaagtattgaatgtagccatgg |
3235312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 3258785 - 3258702
Alignment:
| Q |
182 |
acctcattcacaaggttaaaacaacattcattaccagctgtttgattaccaaaaaatatactaaagaaaatttcatcaccacat |
265 |
Q |
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| T |
3258785 |
acctcattaataaggttataacaacattcagtaccagttgtttgattaccagaaaacacagtatagaaaatctcatcaccacat |
3258702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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