View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3352-Insertion-2 (Length: 330)
Name: NF3352-Insertion-2
Description: NF3352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3352-Insertion-2 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 23028939 - 23029163
Alignment:
| Q |
8 |
attggaaacaaaatgaatgatatttacaaagtccaaaaatgatatcaccgtccatgaattatggggcctcttaatttcattctttgataatgacrttcat |
107 |
Q |
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| T |
23028939 |
attgggaacaaaatgaatgatatttacaaagtccaaaaatgttatcaccgtccatgaattatggggcctcttaatttcattctttgataatgacattcat |
23029038 |
T |
|
| Q |
108 |
ttggaaattgggattgagcaaccataggttaaatactccatcatctctaacccctccttcacaaaatctt----tctctcacacacattattcaaatata |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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| T |
23029039 |
ttggaaattgggattgagcaaccataggttaaatactccatcatctctaacccctccttcacaaaatctttctctctctctcacacattattcaaatata |
23029138 |
T |
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| Q |
204 |
catcgatttataaacctttcctcca |
228 |
Q |
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||||||||||||||||| ||||||| |
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| T |
23029139 |
catcgatttataaacctctcctcca |
23029163 |
T |
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